Query= MSMg01no530_i23.b1 MSMg01no530_i23.b1 CHROMAT_FILE:
MSMg01no530_i23.b1 PHD_FILE: MSMg01no530_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:55 2005
(684 letters)
>mm_chr1_11084620_11085703
Length = 1084
Score = 853 bits (441), Expect = 0.0
Identities = 451/455 (99%), Gaps = 4/455 (0%)
Strand = Plus / Minus
Query: 1 attctacctt-ct-tccagccaaattaactcaaataagattattacagtcttagatgtct 58
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attctaccttcctgt--agccaaattaactcaaataagattattacagtcttagatgtct 396
Query: 59 aaatagagtctgggatgtcatgctaaaaggtttgaagaaaatagagcctattcaacttta 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaatagagtctgggatgtcatgctaaaaggtttgaagaaaatagagcctattcaacttta 336
Query: 119 gttagagctttagttagagttagagtcaggaagttcagttgctccaaaatcattttcaag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gttagagctttagttagagttagagtcaggaagttcagttgctccaaaatcattttcaag 276
Query: 179 tttcacactgtttctattggttatctgacctacaccatttctgtaaagttaacttttatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttcacactgtttctattggttatctgacctacaccatttctgtaaagttaacttttatt 216
Query: 239 tgaaaagtccacagctgtcatagttaaagttactattggtatgatgaaacatcacagccc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgaaaagtccacagctgtcatagttaaagttactattggtatgatgaaacatcacagccc 156
Query: 299 aaaccaagttgggaaagaaagcgtttattcagcttacacttccatatggcagttgatcat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aaaccaagttgggaaagaaagcgtttattcagcttacacttccatatggcagttgatcat 96
Query: 359 taaaggaagtcaaacaggacagaaagctgatgcagaggttagggaggagtgcttcttatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 taaaggaagtcaaacaggacagaaagctgatgcagaggttagggaggagtgcttcttatt 36
Query: 419 ggcttgcttcatctgactttctcagcctgcaggac 453
|||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcttgcttcatctgactttctcagcctgcaggac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_i23.g1 MSMg01no530_i23.g1 CHROMAT_FILE:
MSMg01no530_i23.g1 PHD_FILE: MSMg01no530_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:55 2005
(671 letters)
>mm_chr1_10932516_10933586
Length = 1071
Score = 1147 bits (593), Expect = 0.0
Identities = 644/672 (95%), Gaps = 18/672 (2%)
Strand = Plus / Plus
Query: 4 gggaaccagaggtctgcgatggtgcaagtatctcaggatcatatacagtcagcccaactc 63
|||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 214 gggaaccagaggtctgagatggtgcaagtatc--------------agtcagcccaactc 259
Query: 64 aacatgaacagtaaaatatatgtggcttagccaatagcaaggaacctctaataaggtact 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 aacatgaacagtaaaatatatgtagcttagccaatagcaaggaacctctaataaggtact 319
Query: 124 ttccacatgaagcaatgaaacacatttccttcgtcttgattttttgtttgtttgtttgtt 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 ttccacatgaagcaatgaaacacatttccttcatcttgattttttgtttgtttgtttgtt 379
Query: 184 tgttt----ttcaaatgcctagcaaaacctttctgtggcttctcctcctagttggtctga 239
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtttgtttttcaaatgcctagcaaaacctttctgtggcttctcctcctagttggtctga 439
Query: 240 cgggttgtctaatttataaaactactatctgttcaaataagctcattaaggttttttgca 299
| || |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct: 440 caggctgtctaatttataaaattactatctgttcaaaaaagctcattaagattttttgca 499
Query: 300 aggaaactattttcctttgcttctccaatcaaggtcccatttgtcccagttctccaatgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggaaactattttcctttgcttctccaatcaaggtcccatttgtcccagttctccaatgc 559
Query: 360 taactgacaattttctctgaattaggcactactccagcccttgcagggcaagtgagcatt 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 taactgacaattttctctgaattaggcactattccagcccttgcagggcaagtgagcatt 619
Query: 420 tgcagaattcgctcacaaacgtgtaatcctaaacaccgaactgagatggatgagaacaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcagaattcgctcacaaacgtgtaatcctaaacaccgaactgagatggatgagaacaat 679
Query: 480 cgtccacagtgagacctgcctgcataagagtctcccaacagtaggggagccctgtggaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cgtccacagtgagacctgcctgcataagagtctcccaacagtaggggagccctgtggaaa 739
Query: 540 ggctttttgcaagccaggaggaaaccaagtaaatgtgaaaaggaagaggaaagggaaatg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggctttttgcaagccaggaggaaaccaagtaaatgtgaaaaggaagaggaaagggaaatg 799
Query: 600 gagatttgtggcctgtttggatgctgcactatttgaagcangctcttgctttcagttttg 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 800 gagatttgtggcctgtttggatgctgcactatttgaagcaggctcttgctttcagttttg 859
Query: 660 agggcttttaaa 671
||||||||||||
Sbjct: 860 agggcttttaaa 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
