NNNNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCACAACCTCAGGTTCCCTTAATGTTCTCAATCTTCTCC
ACTCCCCATCCATTATTTTCATTTCTTTCTTTTAGATACTATAATTACAT
CAGCCCCTTTGCTCTCTTTAACCCCTCCCATACAGGCCCCCATGTTCTCT
TGCAAATTCATGTCCTCTTTTTCCATTAAATGTGATTACAAACACATGTG
TGCATACATTAATTTTAGAACATTCTATAACAATTTCTACACCATTATCA
CCTCTTCACAACACAGATTTATTCTCTCCCATGATTTAGGTTCCTCGGTA
CGAAGGGACTGAGTCCTCTGCCCAGAGTTTTATCAGGTTAAATTAAATTC
TTACTTGGCTATGCTTTCTTGTGAGTTGGGGGCATTGCTTCTTAGATTAC
TGTTTGTGGTCAAAATTCAATTCCATATACTTACAGGGTGAAGAACCATG
TCACTCCTGGAGGCCAAACTTCTTTCTGGGCAAACGAGCCTTCTTTACAA
ATTGGAAGTTCTCTTCCTTCTGATCTCCCAGAAAGGCATGTCCTTCTCTG
TATTAAAATTGGAACAAATCAGATCAGACTGGGTGAGAGTATCACTCTTT
ACCTTAAGTAAAGCTGAGCTGACTACTAAGGTAAACATTAAGTTTATAGC
TTTCAAACTTCATCAATTCTGAGTTAGTTGAAGACACTATTTAA

NCCCCGAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATG
GTAGAGAAGCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAAT
GCAAACAAAAACAACCCTGAGATTCCACTTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGG
GGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGTGGTTCCTCAGAAAACTGGATATAGTACTACTGGAGA
ATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATATCCCAACCGGT
AAGAAGGACACATGCTCCATTATGTTCATAGCAGCCTTATTCATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCTCAACAGAGGAATGGATAAGAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATAAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GGGAGGTAACCCAATCACAACAGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAGAAAATTAGGATACCCAAGATATAAGATACAATT
TGCTAAACGCATGAAACTCAAGAAGAATGAAAACCAAAGTGTGGACACTT
TGTCCCT

Query= MSMg01no531_b04.b1 MSMg01no531_b04.b1 CHROMAT_FILE:
MSMg01no531_b04.b1 PHD_FILE: MSMg01no531_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:36 2005
         (692 letters)



>mm_chr1_144231134_144232225
          Length = 1092

 Score = 1294 bits (669), Expect = 0.0
 Identities = 681/685 (99%)
 Strand = Plus / Minus

                                                                        
Query: 8    ttccacaacctcaggttcccttaatgttctcaatcttctccactccccatccattatttt 67
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1092 ttccacaacctcaggttcccttaatgtactcaatcttctccactccccatccattatttt 1033

                                                                        
Query: 68   catttctttcttttagatactataattacatcagcccctttgctctctttaacccctccc 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 catttctttcttttagatactataattacatcagcccctttgctctctttaacccctccc 973

                                                                        
Query: 128  atacaggcccccatgttctcttgcaaattcatgtcctctttttccattaaatgtgattac 187
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 972  atacaggcccccatgttctcttacaaattcatgtcctctttttccattaaatgtgattac 913

                                                                        
Query: 188  aaacacatgtgtgcatacattaattttagaacattctataacaatttctacaccattatc 247
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  aaatacatgtgtgcatacattaattttagaacattctataacaatttctacaccattatc 853

                                                                        
Query: 248  acctcttcacaacacagatttattctctcccatgatttaggttcctcggtacgaagggac 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  acctcttcacaacacagatttattctctcccatgatttaggttcctcggtacgaagggac 793

                                                                        
Query: 308  tgagtcctctgcccagagttttatcaggttaaattaaattcttacttggctatgctttct 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  tgagtcctctgcccagagttttatcaggttaaattaaattcttacttggctatgctttct 733

                                                                        
Query: 368  tgtgagttgggggcattgcttcttagattactgtttgtggtcaaaattcaattccatata 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  tgtgagttgggggcattgcttcttagattactgtttgtggtcaaaattcaattccatata 673

                                                                        
Query: 428  cttacagggtgaagaaccatgtcactcctggaggccaaacttctttctgggcaaacgagc 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  cttacagggtgaagaaccatgtcactcctggaggccaaacttctttctgggcaaacgagc 613

                                                                        
Query: 488  cttctttacaaattggaagttctcttccttctgatctcccagaaaggcatgtccttctct 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  cttctttacaaattggaagttctcttccttctgatctcccagaaaggcatgtccttctct 553

                                                                        
Query: 548  gtattaaaattggaacaaatcagatcagactgggtgagagtatcactctttaccttaagt 607
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 552  gtattaaaattggaacaaatcagatcagactgggtgagagtatcactctttatcttaagt 493

                                                                        
Query: 608  aaagctgagctgactactaaggtaaacattaagtttatagctttcaaacttcatcaattc 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492  aaagctgagctgactactaaggtaaacattaagtttatagctttcaaacttcatcaattc 433

                                     
Query: 668  tgagttagttgaagacactatttaa 692
            |||||||||||||||||||||||||
Sbjct: 432  tgagttagttgaagacactatttaa 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)