BAC Information

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BAC

Clone NameMSMg01-531B15
Chromosome1 (Build37)
Map Location 186,844,831 - 187,035,274
singlet/doubletdoublet
Overlap genenone
Upstream gene1700056E22Rik, Dusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531B15.T7 (MSMg01no531_b15.b1)MSMg01-531B15.TJ (MSMg01no531_b15.g1)
ACCAG599584AG599585
length764774
length of high quality
(start - end)		616 (72 - 687)610 (74 - 683)
definitionCHROMAT_FILE: MSMg01no531_b15.b1 PHD_FILE: MSMg01no531_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:38 2005CHROMAT_FILE: MSMg01no531_b15.g1 PHD_FILE: MSMg01no531_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,034,923 - 187,035,274)(186,844,831 - 186,845,440)
sequence
CACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTACACTCTCCAAAAAAACTGGTAGAAGTCTGTATTCCACGAC
TGGATACAGAACCAAGAAAATCGCCAGGTTGAAGAGATGCACTCCTGTGT
TGATTGTTGTCCTGGTCAAAACAGCCAAGATATAGAATTAAGCCTGGAGA
TCTATTGATGGATCAGTGAAGAAAATGCAGTATACATGTGCATAATGGAA
CACTATTTGACCATTAAAAATGAGCTCTCATTTGCAGCAACACGGATCAA
AAAGAAAGGACATAATGTCAAATGAGTTAAGTCAAGTCCAGAAATACAAA
TACCGTGTATTTTCACTCACATATGGAAGGTGGAAAGTTTAAGTAGCCAT
AGTGGTTTGTGTCTATAATCTCAGCACGTGGGAGGCTGAGACAGATCTTG
TTGAATTTAAAGGCAACCTGGGCTACATAGTAAGCTCTAGGCCAGCTTGG
GCCAAACAACCAGTCCCTATCTCAAAACAAATAAATGACAGCAACATTTA
CTTCATAAAAACAGAGAGGTTAGTAGAGTGGCTGGCAGAGGTGGTAAAGG
TGTGAGAACAGGGACAGGGGCAGGGGCTGAGAGATGGCTGGCATGGTGGT
GATGGGTTATGGAGAGATACAGAGGAGGAGTGAATAGACAGAACGAGTGA
CTGGTGTTCTATGGCACAGTACAGTAACAACAGGTGACATTACTAGCTGT
ATATTTCATAGTTG

TCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAGCAACACTCCTGAGACTTCCAGA
CCATTTGGAGGACTGAACTGAAGCAGATTTGCCGTGCATCCAGCTGCTAG
CCTGGGATGAAGGATCATAGGGAGAAGATGCTGAAACCATCATTATAGAT
TTTCCCAGCAGTGGCTTTCCACAGACTGGAATCGAAATGGTAATTGGTGC
TGATGCCTCAGAGGTCATTGGCAAGCAGGGAAAGCTCTCTGGCTTTCTAT
AGTAGAGTCTCCTCTTGAAGCAAGTATTGACCTTGACGTAGCTTTGGGAT
GAATTCACGTGGAGAGAAAGCCTAGGAGTGCCACCTCTGAATAGCAGCTG
ATGGCCTCTTAGAAGCAAGCACAGCAATGAGAGAGGAGGACTTCTCTTTT
AAAAAGAATCTCTGCTACCTGCTCAGGTACACACAGACCCATACTCACCA
GGAAGTAAACCTTCCAAATGAACAGATTGGCCAATGGCATGGGTGAATGT
TTTCTGTAATGATCCTGTTTCTCAGCACCGGGGAGAGAGGAGAGAGAAGT
TTGCCTGTCCTTTCTGGCTGCAGATGACATTAAAACATACTGTTGAATAA
TAAATGTCCATTAACTAGTCTTGCAATAATTGCATTTTAACTAATTTTAT
GATCATATAGAAACACATTTTACATCAAAGTGCAACCAGATAAAAGTACC
CTGCCTGGCAGATCAAACCAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_b15.b1 MSMg01no531_b15.b1 CHROMAT_FILE:
MSMg01no531_b15.b1 PHD_FILE: MSMg01no531_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:38 2005
         (616 letters)



>mm_chr1_187034259_187035274
          Length = 1016

 Score =  665 bits (344), Expect = 0.0
 Identities = 350/352 (99%)
 Strand = Plus / Minus

                                                                        
Query: 265  gtccagaaatacaaataccgtgtattttcactcacatatggaaggtggaaagtttaagta 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 gtccagaaatacaaataccgtgtattttcactcacatatggaaggtggaaagtttaagta 957

                                                                        
Query: 325  gccatagtggtttgtgtctataatctcagcacgtgggaggctgagacagatcttgttgaa 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  gccatagtggtttgtgtctataatctcagcacgtgggaggctgagacagatcttgttgaa 897

                                                                        
Query: 385  tttaaaggcaacctgggctacatagtaagctctaggccagcttgggccaaacaaccagtc 444
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  tttaaaggcaacctggactacatagtaagctctaggccagcttgggccaaacaaccagtc 837

                                                                        
Query: 445  cctatctcaaaacaaataaatgacagcaacatttacttcataaaaacagagaggttagta 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  cctatctcaaaacaaataaatgacagcaacatttacttcataaaaacagagaggttagta 777

                                                                        
Query: 505  gagtggctggcagaggtggtaaaggtgtgagaacagggacaggggcaggggctgagagat 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  gagtggctggcagaggtggtaaaggtgtgagaacagggacaggggcaggggctgagagat 717

                                                                
Query: 565  ggctggcatggtggtgatgggttatggagagatacagaggaggagtgaatag 616
            |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  ggctggcacggtggtgatgggttatggagagatacagaggaggagtgaatag 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_b15.g1 MSMg01no531_b15.g1 CHROMAT_FILE:
MSMg01no531_b15.g1 PHD_FILE: MSMg01no531_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:38 2005
         (610 letters)



>mm_chr1_186844631_186845640
          Length = 1010

 Score = 1141 bits (590), Expect = 0.0
 Identities = 605/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagcaacactcctgagacttccagaccatttggaggactgaactgaagcagatttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagcaacactcctgagacttccagaccatttggaggactgaactgaagcagatttgcc 260

                                                                       
Query: 61  gtgcatccagctgctagcctgggatgaaggatcatagggagaagatgctgaaaccatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcatccagctgctagcctgggatgaaggatcatagggagaagatgctgaaaccatcat 320

                                                                       
Query: 121 tatagattttcccagcagtggctttccacagactggaatcgaaatggtaattggtgctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tatagattttcccagcagtggctttccacagactggaatcgaaatggtaattggtgccga 380

                                                                       
Query: 181 tgcctcagaggtcattggcaagcagggaaagctctctggctttctatagtagagtctcct 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcctcagaggtcattggcaagcagggaaagctctctggctttctatagtagagtctcct 440

                                                                       
Query: 241 cttgaagcaagtattgaccttgacgtagctttgggatgaattcacgtggagagaaagcct 300
           |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cttgaagcaaatattgaccttgatgtagctttgggatgaattcacgtggggagaaagcct 500

                                                                       
Query: 301 aggagtgccacctctgaatagcagctgatggcctcttagaagcaagcacagcaatgagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagtgccacctctgaatagcagctgatggcctcttagaagcaagcacagcaatgagag 560

                                                                       
Query: 361 aggaggacttctcttttaaaaagaatctctgctacctgctcaggtacacacagacccata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaggacttctcttttaaaaagaatctctgctacctgctcaggtacacacagacccata 620

                                                                       
Query: 421 ctcaccaggaagtaaaccttccaaatgaacagattggccaatggcatgggtgaatgtttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaccaggaagtaaaccttccaaatgaacagattggccaatggcatgggtgaatgtttt 680

                                                                       
Query: 481 ctgtaatgatcctgtttctcagcaccggggagagaggagagagaagtttgcctgtccttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtaatgatcctgtttctcagcaccggggagagaggagagagaagtttgcctgtccttt 740

                                                                       
Query: 541 ctggctgcagatgacattaaaacatactgttgaataataaatgtccattaactagtcttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggctgcagatgacattaaaacatactgttgaataataaatgtccattaactagtcttg 800

                     
Query: 601 caataattgc 610
           ||||||||||
Sbjct: 801 caataattgc 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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