Query= MSMg01no531_d09.b1 MSMg01no531_d09.b1 CHROMAT_FILE:
MSMg01no531_d09.b1 PHD_FILE: MSMg01no531_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:46 2005
(605 letters)
>mm_chr1_21523251_21524252
Length = 1002
Score = 1065 bits (551), Expect = 0.0
Identities = 574/583 (98%), Gaps = 3/583 (0%)
Strand = Plus / Minus
Query: 23 gttaggggagattatcacttggtgcaaaactacttgccaaacaaggacttccatgaaaaa 82
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gttagggaagattatcacttggtgcaaaactacttgccaaacaaggacttccatgaaaaa 743
Query: 83 cccaaacagaacaactcacaaagcaggtggttggccaagattccctcaacttttacagta 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cccaaacagaacaactcacaaagcaggtggttggccaagattccctcaacttttacagta 683
Query: 143 taaagtcagttcatggatgactgtagggatgttccaatccagattttaaaaccaattaaa 202
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taaagtcagttcatgggtgactgtagggatgttccaatccagattttaaaaccaattaaa 623
Query: 203 agttggttgtattccagttccaaaggcaatgcccatgtatttctgttcttcaagctagaa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agttggttgtattccagttccaaaggcaatgcccatgtatttctgttcttcaagctag-- 565
Query: 263 aaaaaaaagttctttcccaaatgcctgctgcctcttgataactctttccagccatggatg 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 -aaaaaaagttctttcccaaatgcctgctgcctcttgataactctttccagccatggatg 506
Query: 323 catcaacacacagtagccttttaatctttctctgtctgcttcagatagttgaaggtcttt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catcaacacacagtagccttttaatctttctctgtctgcttcagatagttgaaggtcttt 446
Query: 383 ctcataaagtaatcttctgttctccatcatcctacttgcctggatacacctatcaatggt 442
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ctcagaaagtaatcttctgttctccatcatcctacttgcctggatacaactatcaatggt 386
Query: 443 gaccttgcagatttaatatctgcataatgtgggttttgttagctttgggggaatttctgt 502
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 gaccttgcagatttaatatctgcataatttgggttttgttagctttgggggaatttctgt 326
Query: 503 ttaaatgggcattttaaagctagaaaactaaatgctctgtaagttgacatagataaacat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 ttaaatgggcattttaaagctagaaaactaaatgctctgtaagttgacatagataaatat 266
Query: 563 ttaatgaattcccattagagcatagataaatatccacttgcag 605
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatgaattcccattagagcatagataaatatccacttgcag 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1002
Length adjustment: 10
Effective length of query: 595
Effective length of database: 992
Effective search space: 590240
Effective search space used: 590240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_d09.g1 MSMg01no531_d09.g1 CHROMAT_FILE:
MSMg01no531_d09.g1 PHD_FILE: MSMg01no531_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:46 2005
(106 letters)
>mm_chr1_21340940_21341445
Length = 506
Score = 190 bits (98), Expect = 3e-53
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 1 ttggtattcataacttcgcagacctccattggtaaatgctttgggaaagcagcagtttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtattcataacttcgcagacctccattggtaaatgctttgggaaagcagcagtttgg 260
Query: 61 aaaagcagtgttgttggtggtagtgggtgggtgggggacaggtgtt 106
||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 261 aaaagcagtgttggtggtggtggtgggtgggtgggggacaggtgtt 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space: 48804
Effective search space used: 48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
