Query= MSMg01no531_e02.b1 MSMg01no531_e02.b1 CHROMAT_FILE:
MSMg01no531_e02.b1 PHD_FILE: MSMg01no531_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:49 2005
(692 letters)
>mm_chr1_181255237_181256328
Length = 1092
Score = 926 bits (479), Expect = 0.0
Identities = 520/537 (96%), Gaps = 9/537 (1%)
Strand = Plus / Minus
Query: 5 gaattcttttttattttctccaattgtttatgcctggaatccccatttcagttagcgctt 64
||||||||||||| ||||| || |||| |||||||||||||||| |||||||||||||||
Sbjct: 531 gaattcttttttactttcttcagttgtgtatgcctggaatccccgtttcagttagcgctt 472
Query: 65 gttaagatgttggccttttcccatggaataggacagcttaatatatggttcttattagtt 124
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 471 gttaagatgttggccttttcccatgggatagggcagcttaatatatggttcttattagtt 412
Query: 125 tgtctagttcgttaccattcctctgtcaagctaaatggcttttagatgactcgtgcattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgtctagttcgttaccattcctctgtcaagctaaatggcttttagatgactcgtgcattt 352
Query: 185 aagtctgttcaaaagttgttaaggtttgtaatttatcatataaccatttctgaccttgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aagtctgttcaaaagttgttaaggtttgtaatttatcatataaccatttctgaccttgtt 292
Query: 245 tggtccctgactagagtgatgttcattgaatatatattgaagaatatgagaaacattaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tggtccctgactagagtgatgttcattgaatatatattgaagaatatgagaaacattaat 232
Query: 305 gtcgcactaaaagcattagcagtaagcgtgtgtgt--gtgtgtgtgtg-tgtgtgtgtga 361
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 231 gtcgcactaaaagcattagcagtaagcgtgtgtgtttgtgtgtgtgtggtgtgtgtgtga 172
Query: 362 gcgcatgtgcgaggtggctaagttgttgctggcaatcaatcataaggctttatttcttat 421
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gcacatgtgcgaggtggctaagttgttgctggcaatcaatcataaggctttatttcttat 112
Query: 422 atttggtagtgaagacattttcccattatttataatttttaaattacttccattttaaaa 481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 111 atttggtagtgaagacattttcc-attatttataatttttaaattacttccattttaaaa 53
Query: 482 ttagccaccctcatttcagcccatgttcaacagtgatataatatattttctgaatct 538
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 52 ttagccaccctcatttcagcccatgttcaacagtgatata-----ttttctgaatct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_e02.g1 MSMg01no531_e02.g1 CHROMAT_FILE:
MSMg01no531_e02.g1 PHD_FILE: MSMg01no531_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:50 2005
(533 letters)
>mm_chr1_181071002_181071930
Length = 929
Score = 936 bits (484), Expect = 0.0
Identities = 520/534 (97%), Gaps = 6/534 (1%)
Strand = Plus / Plus
Query: 1 caacttattcacctgaacctctctggactcagcagtgtgagctgagcgacatcccaggaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 caacttattcacctgaacctctctggactcagcagtgtgagctgagcgacatcccaagaa 260
Query: 61 gcactgcctgctacagaggaagctttctgtcaatagaagatgaaatgcgccaagaagaaa 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcactgc----tacagaggaagctttctgtcaatagaagatgaaatgcgccaagaagaaa 316
Query: 121 aaataacaccaggcaagtcccaacatgcctgcctacccacaactttggttcccataagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaataacaccaggcaagtcccaacatgcctgcctacccacaactttggttcccataagaa 376
Query: 181 tctactcttcttgccaacccatcttcaaccttccagactggttgtgttttgcaagtttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tctactcttcttgccaacccatcttcaaccttccagactggttgtgttttgcaagtttct 436
Query: 241 cccagctctaggtgccatggaagaggcagtgtccagcttcgttattgggacaaggagctg 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 437 cccagctctaggtgccatggaagaggcagtgtccaacttcgttattgggacaaggagctg 496
Query: 301 gggagtttttaaatgttagtcgccctttcccgagttaaagaagcatgcctcttttgtatc 360
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 497 gggagtttttaaatgttaatcgccctttcccgagttgaagaagcatgcctcttttgtatc 556
Query: 361 atgatcctggccctgaaagctgcggtttgaagacagaaacaaggataaatctctacagtg 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct: 557 atgatcctggccctgaaagctgcggtttgaagacagaaacgaggataaatctccacagcg 616
Query: 421 atgactaatgcattgcagggggggactgaaaatgccttaaatgtcttccatgatcccgct 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgactaatgcattgcaaggggggactgaaaatgccttaaatgtcttccatgatcccgct 676
Query: 481 tttgaactaccaatgagagtcaggcagaggtcgccg-ctgcagttctgtaatct 533
|||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 677 tttgaactaccaatgagagtcaggcagaggtcgc-gtctgcagttctgtaatct 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 929
Length adjustment: 10
Effective length of query: 523
Effective length of database: 919
Effective search space: 480637
Effective search space used: 480637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
