BAC Information

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BAC

Clone NameMSMg01-531F13
Chromosome1 (Build37)
Map Location 120,793,127 - 120,965,452
singlet/doubletdoublet
Overlap geneGli2
Upstream geneLOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531F13.T7 (MSMg01no531_f13.b1)MSMg01-531F13.TJ (MSMg01no531_f13.g1)
ACCAG599770AG599771
length764760
length of high quality
(start - end)
465 (76 - 540)459 (78 - 536)
definitionCHROMAT_FILE: MSMg01no531_f13.b1 PHD_FILE: MSMg01no531_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:56 2005CHROMAT_FILE: MSMg01no531_f13.g1 PHD_FILE: MSMg01no531_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,793,127 - 120,793,591)(120,965,044 - 120,965,452)
sequence
CCGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGCTATTCAAAGACCTTGTCTTCCAAAATGGAAGACAGA
CACAGCTCCTGAGAAATGACACTTGAAGGTGTCCTCTGACTTCTACATAC
ATGCATACAACATGGGCATACACAGATGCACATGAAGAGAACACACATAC
ACACACACATATAAGGAGGGAGAAAGAGAAGGAGGGAAGGGAAAAGAACA
AATCTAGGCCAAGTTCATGGACTTGGCGATAAGAGCAGCCAGCAATTAGT
ACCTGGGCCCCCATGCTCCTTGCACCCATTGTAGGGATGGAGCTAGATGA
ACTACCTTGGGAAAGATGAGGTCCCCAAACCGCGTTTTCTTTTGATAGGT
TCCCTTGCCCCTCTGACTGACTCCCCTGCCACCCCACCATCTGGCAGCTT
CCAGGCTGTGTGGTCAGAGTCTCAGAGGTACTGGCTCCTTTCAGAGGGAC
ATCTGTGACACTCCACTATCAGGTCCCTATGGGCCACAGTGTTTGCAATC
GATGCTCAGCTCCCATGGGAGGAGGCTGAGAGAACGAGACAGGGAGACAC
CTGGAGCTCACTAGCTGACCAGACAACCCAGGCTCATCAATGAGAAACTG
TTAAAACAAACTAACAATCATACAAACTAACAAAAGCAAAAGCACAAGCA
TACAATACATAACCATGGATAGATCCTGAGGACCCATACTCAAGACTGTC
TTCTGACCTCCCAN
TCCATCCCAGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCAGCCAGGGCTACATATC
AAAACCCTGTCTCAAAAGAAGCAAGGCAAAGACCAACCAAGAACTTGACT
AGTGGCTAAAGAAACTTGGCATGACTGTAAAAACTTGTGCACATGTGCCA
TGGAACCCATAGATGACAGCTTACGGGGGTGTTGGTTCTTTCCTATCAAG
TGGATCCCAGGGATTGGATTTAGGTCTTCAGTCTTAGCCGCAAGCACCTT
TACACACTGAGCCACCTTGCAGGTCCCATACATGACTTTAACAAAGCCAA
AGCCAGCATCAGGTCAGAGTTCCAGGTCATGTGTCTATAAACCCCGAGGT
CCGTGTCTGCTTTCTGTTCATAGATTTGGTTTTCCCCCAGTTTGCAGCTG
ATGAATCCTGGCTCAGCATTTCCTCAGCCTTGGTCCCTTTCCCTGGAGGT
CCACCCCAACCACAGGTTCCTTTGCCTCCCTGAAGTTCAGAGAGAGCCAG
TCCTCTGTGGCAGTGAGGTCTCTCCTACCATGTGACAAATTCATATTGTC
AGTCTTGGTAGGGAGTCGCTTTACCTGCTCATCCATCTCTCCTGGCTAGT
CCTTTGATTGGCAGTGACACATCCTGAATGGTGGTGGCGGCGCCCCTCTG
TATTTGTTGCCCTGCTGGTTGGTCGACTGATGCGCACCGGAATGGTATCG
GTGATTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_f13.b1 MSMg01no531_f13.b1 CHROMAT_FILE:
MSMg01no531_f13.b1 PHD_FILE: MSMg01no531_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:56 2005
         (465 letters)



>mm_chr1_120792927_120793791
          Length = 865

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtcttccaaaatggaagacagacacagctcctgagaaatgacacttgaaggtgtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtcttccaaaatggaagacagacacagctcctgagaaatgacacttgaaggtgtcct 260

                                                                       
Query: 61  ctgacttctacatacatgcatacaacatgggcatacacagatgcacatgaagagaacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacttctacatacatgcatacaacatgggcatacacagatgcacatgaagagaacaca 320

                                                                       
Query: 121 catacacacacacatataaggagggagaaagagaaggagggaagggaaaagaacaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacacacacacatataaggagggagaaagagaaggagggaagggaaaagaacaaatct 380

                                                                       
Query: 181 aggccaagttcatggacttggcgataagagcagccagcaattagtacctgggcccccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggccaagttcatggacttggcgataagagcagccagcaattagtacctgggcccccatg 440

                                                                       
Query: 241 ctccttgcacccattgtagggatggagctagatgaactaccttgggaaagatgaggtccc 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ctccttgcacccattgtagggatggagctagatgaactaccttggggaagatgaggtccc 500

                                                                       
Query: 301 caaaccgcgttttcttttgataggttcccttgcccctctgactgactcccctgccacccc 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaccgtgttttcttttgataggttcccttgcccctctgactgactcccctgccacccc 560

                                                                       
Query: 361 accatctggcagcttccaggctgtgtggtcagagtctcagaggtactggctcctttcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatctggcagcttccaggctgtgtggtcagagtctcagaggtactggctcctttcaga 620

                                                        
Query: 421 gggacatctgtgacactccactatcaggtccctatgggccacagt 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggacatctgtgacactccactatcaggtccctatgggccacagt 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no531_f13.g1 MSMg01no531_f13.g1 CHROMAT_FILE:
MSMg01no531_f13.g1 PHD_FILE: MSMg01no531_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:56 2005
         (459 letters)



>mm_chr1_120964594_120965452
          Length = 859

 Score =  760 bits (393), Expect = 0.0
 Identities = 405/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 51  aaagaccaaccaagaacttgactagtggctaaagaaacttggcatgactgtaaaaacttg 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aaagaccaaccaagaacttgactagtggctaaagaaacttggcatgactgtaaaaacttg 800

                                                                       
Query: 111 tgcacatgtgccatggaacccatagatgacagcttacgggggtgttggttctttcctatc 170
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 799 tgcacatgtgccatggaacccatagatgactgcttacgggggtgttggttctttcctatc 740

                                                                       
Query: 171 aagtggatcccagggattggatttaggtcttcagtcttagccgcaagcacctttacacac 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aagtggatcccagggattggatttaggtcttcagtcttagccgcaagcacctttacacac 680

                                                                       
Query: 231 tgagccaccttgcaggtcccatacatgactttaacaaagccaaagccagcatcaggtcag 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgagccaccttgcaggtcccatacatgactttaacaaagccaaagccagcatcaggtcag 620

                                                                       
Query: 291 agttccaggtcatgtgtctataaaccccgaggtccgtgtctgctttctgttcatagattt 350
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 619 agttccaggtcatgtgtctatagaccccgaggtctgtgtctgctttctgttcatagattt 560

                                                                       
Query: 351 ggttttcccccagtttgcagctgatgaatcctggctcagcatttcctcagccttggtccc 410
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 559 ggttttcccccagtttgcagctgaggaatcctggctcagcatttcctcagccttggtccc 500

                                                            
Query: 411 tttccctggaggtccaccccaaccacaggttcctttgcctccctgaagt 459
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttccctggaggtccaccccaaccacaggttcctttgcctccctgaagt 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)