Query= MSMg01no531_f18.b1 MSMg01no531_f18.b1 CHROMAT_FILE:
MSMg01no531_f18.b1 PHD_FILE: MSMg01no531_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:57 2005
(662 letters)
>mm_chr1_178410757_178411818
Length = 1062
Score = 1091 bits (564), Expect = 0.0
Identities = 639/671 (95%), Gaps = 13/671 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgactctaca-atatttt-------gt-----ttttggttttatttcttttca 51
||||||||||||||| | ||||||| || |||||||||||||||||||||
Sbjct: 192 gaattcctgactctagacatattttggttttggttttggttttggttttatttcttttca 251
Query: 52 ttactaaactgtggctattttgctgttgttttatatctaanactctacatcagacaactg 111
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 252 ttactaaactgtggctcttttgctgttgttttatatctaaaactctacatcaaacaactg 311
Query: 112 aaatgacattttgtttgttttccttttctggtttctagataggttagagtgagagacagt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aaatgacattttgtttgttttccttttctggtttctagataggttagagtgagagacagt 371
Query: 172 gagattttattactagcctttagtgattctgtaatatgtaataaagtttttcagtgaaaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 372 gagattttattactagcctttagtgattctgtaatatgtaataaagtttttcactgaaaa 431
Query: 232 ctggctagaggcctcccaaagctccagtccaacagagatgatgcttgatagagaggcacg 291
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 432 ctggctagaggcctcccaaagctccagtcggacagagatgatgcttgatagagaggcacg 491
Query: 292 gtctgcctgggaggtgtatcctgagaagtcatgactaggtttgagagggaataaagttcc 351
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 gtctgcctgggaggtgtatcctgagaagtcatgactaggtttgggagggaataaagttcc 551
Query: 352 tggccaatggatttttctaggataatgagaactgctattaaaatgtaggattcattttat 411
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 552 tggccgatggatttttctaggataatgagaactgctattaaaatggaggattcattttat 611
Query: 412 ctgcctgttttgcaggaaggtaattaaaacacaaatcagaacaaggaaaagacagaaacc 471
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 612 ctgcctgttttgcaggaaggtaattaaaacaaaaatcagaacaaggaaaagacagaaacc 671
Query: 472 tggaactacacaatcttgtccaagagagagtctgtttatcagagcagccaacttgcatgt 531
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 672 tggaactacccaatcttgtccaagagagagtctgtttattggagcagccaacttgcatgt 731
Query: 532 tttcatagacactatgaggtctatgaaacaatgggtggtctaaaagatttaatcagagac 591
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 732 tttcatagacactatgaggtctatgaaacaacaggtggtctaaaggatttaatcagagac 791
Query: 592 tgaattgtatggagttagacctagtgaggagagtcagatttagacatattacacagatcc 651
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 792 tgaattgtatggaattagacctagtgaggagagtcagacttagacatattacacagatcc 851
Query: 652 tctgcttcaag 662
|||||||||||
Sbjct: 852 tctgcttcaag 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_f18.g1 MSMg01no531_f18.g1 CHROMAT_FILE:
MSMg01no531_f18.g1 PHD_FILE: MSMg01no531_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:57 2005
(642 letters)
>mm_chr1_178556926_178557967
Length = 1042
Score = 1210 bits (626), Expect = 0.0
Identities = 638/642 (99%)
Strand = Plus / Minus
Query: 1 agttgctccttctccttgttgctctttggttctttctagtcatgccacagcaattgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 agttgctccttctccttgttgctctttggttctttctagtcatgccacagcaattgtcaa 907
Query: 61 ttgctgcagcagtgtgggggtggggaggtcatttgtcatgaagatgggactacagtggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ttgctgcagcagtgtgggggtggggaggtcatttgtcatgaagatgggactacagtggag 847
Query: 121 ttgtgatagttgtctggggactaatgtggcagcctgttttgctctaacaagggccatttc 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ttgcgatagttgtctggggactaatgtggcagcctgttttgctctaacaagggccatttc 787
Query: 181 tgtgtctgtgtaatgatcctgtttcctcgggagaagcacttcatctttctgaacttccac 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 786 tgtgtctgtgtaatgatcctgtttcctcgggaaaagcacttcatctttctgaacttccac 727
Query: 241 atcctttgctgtaaggtgtgtctgttgtgaagtcattgacctgtcaaacgagcctagttg 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 726 atcctttgctgtaaggtgtgtctgttgtgaagtcattgacctgtcaaacaagcctagttg 667
Query: 301 tgaataaaggaaatcacattttagaggctaattagaattgccatctgggaaaatacatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgaataaaggaaatcacattttagaggctaattagaattgccatctgggaaaatacatat 607
Query: 361 ttaaccaatgttaaaaaatgtgctgaggtttcctgaaaatggtggccatatttatagctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttaaccaatgttaaaaaatgtgctgaggtttcctgaaaatggtggccatatttatagctt 547
Query: 421 tagaccacaagcaggccttgacaatccagaaacagcagcagttgctggcaccacaagttt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tagaccacaagcaggccttgacaatccagaaacagcagcagttgctggcaccacaagtta 487
Query: 481 agctgttctgaaaaagagggactgggcgaagtctccaactctgattatttcagggaggat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agctgttctgaaaaagagggactgggcgaagtctccaactctgattatttcagggaggat 427
Query: 541 tcccttgttccaacagaagttaacaatgctccaaaggtcaatttatgcctggagtttggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcccttgttccaacagaagttaacaatgctccaaaggtcaatttatgcctggagtttggt 367
Query: 601 gtatctgtggccccttaaaggtccctctgctcacatgtctga 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtatctgtggccccttaaaggtccctctgctcacatgtctga 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
