BAC Information

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BAC

Clone NameMSMg01-531J10
Chromosome1 (Build37)
Map Location 41,820,075 - 41,820,274
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531J10.T7 (MSMg01no531_j10.b1)MSMg01-531J10.TJ (MSMg01no531_j10.g1)
ACCAG599953AG599954
length773761
length of high quality
(start - end)
200 (74 - 273)554 (79 - 632)
definitionCHROMAT_FILE: MSMg01no531_j10.b1 PHD_FILE: MSMg01no531_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:15 2005CHROMAT_FILE: MSMg01no531_j10.g1 PHD_FILE: MSMg01no531_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTTTTTTTCCCCCGCGGTCGTTATACGACTCACTTTTCCGAGAGGAT
CCGCGGAATTCATAAGATTACTAGTGATAGCAGCAATGTTATCCATAGCT
GCTAGTGAACATCAATAATTCCACACTATGGAGTTGGAGGCAGGAGGAAC
CGGGTTTCTAGGTAGCCAGAGTCCCAAAGGGAGACCTTAATTGGCCATTC
TTTCTACAGGTAACTAAGATTTCCATGTGTTGCCTATCGAAATAGATTTG
GACAACAAACCGTGAGAAGTAAGACTAATAAGAACTAAAAAAAAAAAGCC
AACATGCACTAACTGTTTCAAATAATAAGCTGTTTTACTTTAACATTGGA
AATAAAATAAAATTTTATTTTCTAATAGAATGTCTCTAAAAATAATTTGT
GGGTTCCTCCAATAATGGGTAGCCAACTTTTTAAGTTTCAAAATTTTATT
CCTTAAACCAAATTGTCTATTTGGGGTAAAAAAGCGGAAATTTCCAAATT
AATTTTAACCATTTTACACTTTTTCTCTTGGGATAATTAATTTTCAAGTC
AAAAACAGGGATTTGGGGGTCTTTTGTCCCCCTGGAACACACTCGGGAAT
TTTTAAAAACAAATATGGGTTCTTATTATCCTTCCTAAAAAACAATAGTG
GGTCCCCCCCCCCTTTTTCAAAAAAAAAAAAAACCCCCCCTCCTCCCCCC
CGGTGGTTCATAAAAAAAAAACCTTCTTTGGTGGGTGGCCCGTTTTTCCC
TTACCCTAAAACAAATAAATAAN
CTACCATTTTATTGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCAT
TTTTAATGGGGTTATTTCATTTTCTGGAGTCCACCTTCTTGAGTTCTTTA
TATATCTATTGGATATTTGTCCCCTATCTGATTTAGGATAGGTAAAGATC
CTTTCCCAATATGTTGGAGGCCTTTTTGTCTTATTGACAGTGTCCTTTGC
CTTACAGAAGCTTTGCAGTTTTATTAGGTCGATTTGTCAATTCTCGATCT
TACAGCACAAGTTCTGAGTCCCATTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTG
TTTTGTTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATCAGG
CTGCTTTCTTATAGAACTCAGAACCACCAGACCAGGAATGGCTCCTCCCA
CAAAAGGATGGGCCCTCTCTCATCAGTCACTAATTAAGAAAGCACTATAC
AGCGGTATGTTATGAAAGTGTTTTTGCAATTGAGGCTGTCTCTTCTCAGA
TAACTTTAACTTGTGTCAAGTTGTTATAAAACTCACTAATATGCTCCCTT
AGTGACTTTCCTGAGATATTTGCCATAGCAATGAGAAAAGAAATGAATTA
TCAAGCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_j10.b1 MSMg01no531_j10.b1 CHROMAT_FILE:
MSMg01no531_j10.b1 PHD_FILE: MSMg01no531_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:15 2005
         (200 letters)



>mm_chr1_41819875_41820474
          Length = 600

 Score =  364 bits (188), Expect = e-105
 Identities = 197/200 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgatagcagcaatgttatccatagctgctagtgaacatcaataattccacactatggag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 400 gtgatagcagcaatgttatccatagctgctagtgaacatcaataattccacattttggag 341

                                                                       
Query: 61  ttggaggcaggaggaaccgggtttctaggtagccagagtcccaaagggagaccttaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttggaggcaggaggaaccgggtttctaggtagccagagtcccaaagggagaccttaattg 281

                                                                       
Query: 121 gccattctttctacaggtaactaagatttccatgtgttgcctatcgaaatagatttggac 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 280 gccattctttctacaggtaactaagatttccatgtgttgcctattgaaatagatttggac 221

                               
Query: 181 aacaaaccgtgagaagtaag 200
           ||||||||||||||||||||
Sbjct: 220 aacaaaccgtgagaagtaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)