BAC Information

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BAC

Clone NameMSMg01-531J17
Chromosome1 (Build37)
Map Location 61,249,621 - 61,250,043
singlet/doubletsinglet
Overlap genenone
Upstream geneNbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313
Downstream geneLOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531J17.T7 (MSMg01no531_j17.b1)MSMg01-531J17.TJ (MSMg01no531_j17.g1)
ACCAG599966AG599967
length779777
length of high quality
(start - end)
424 (80 - 503)347 (77 - 423)
definitionCHROMAT_FILE: MSMg01no531_j17.b1 PHD_FILE: MSMg01no531_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:17 2005CHROMAT_FILE: MSMg01no531_j17.g1 PHD_FILE: MSMg01no531_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTGACGGGGCG
GAATTCACTCCAGATTTGCTAAGAGAGGAGAACAGTCCCAGAGAAGTCCC
TGGGTGAATGAAGACTTCATGTTGCAGAAGGGCTAGTGTGTTTGGAGAAC
CCAAGAAAGGTGAAGTAGTTAATATTGCGTATCAATGTCGCTGAACCTGA
ATCAACTAGCAGGCAAGGCATTGGGCACTTGTGAAAATTTTATTGATGAG
TTTTGCTGAAGCCAGAAGACCTGCCTACTGCGCTTGGCCCATTTCCTGGA
TCATGGACTGTATAAGAATGGAGAAAGTGAGGTGTGCACTAGTCTATATG
CACCAATGCACCACTCTCTGCTCTAGTGTGCACTAGTCTATATGCACCAA
TGCACCACTCTCTGCTCTAGTGTGCACTAATATGTATGCACCAATGCATC
ACTCTCTGCTCTAGTGTGCACTAGTCGATATACACCAATACACTGCTCTC
TGATCTAGTGTGCACTAATATGTATGCACCAATGCACCACTCTCTGCTCT
AGCGTGCCACTAGTCTCTATGCACCACTGCCCCACTCTCTGGTCTAGTGT
GCTCTTATATGTATGCACCAATGCCTCACCTCTCTGCTCTAGTGTGCGCG
TAGTCGATATGCACCGACACGCTCGTTCTCCTGCTCCTAGTGTGCACCTA
AAATGCAGTTAACCTCGGTGCGCCCACTCCCCTGCGCCCTAGGGAGGAAA
TACATATGCTATGGCGTTCAACTGCCCCN
GGCACTGCACGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGCAGTAGAAATCACTTTTG
TCAGGGAAGAGGGTACCAACTGGTCACCCAATGAAGATCCCTGAAAACAG
ACATACACATACATTATGCCAAGTGAAAAGTTTATTTTAGGAATTTATGT
GCACATGTGTATCCATGCACACATGCTACAACAAGTGATGACAAAAGAGG
CTATGAATTTGAAAAAGCAAAAAGGAGCAAGGAGGGGTAAATGAGGTTTT
GGAGGGAGGAGAGGGAAGAAACAATTTAATTACATTATAATTTCAACAAT
AAAAGAAAAAAAAGTCAAAAAATCCACAACTGCTTGCATCTAAGAGGCCC
AAATGCATTATTTTATTACTACAGCCCAAATGCATTCATGGGAGATGGAA
AATTTGCAGGGAAAAAAAAAGACCTGGCTTCCTTTTATTGAACAAAACAA
TAAACCCACGAGAAAAATGTTCTCCTCACAACCTTCTGCAAATGCATTAT
GGATATCGTAATATTTTCCCGAATGGGCCCTACTGATGCCTCCTCATAAA
GGGCTTCCTAAACATATGGCTCCTCTTCCAATCCTTCTCTGCCACCCAGA
AATGCCACCCCATGCCACGCAGCTATTAACGTTACCAAACTGCCCCCCCC
TCCCCACCCCCTTTTCTATATACCGAGGACTGAACTAGATGAACAAGCCC
CACCCCTCTAAAACCTCGCTCCGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_j17.b1 MSMg01no531_j17.b1 CHROMAT_FILE:
MSMg01no531_j17.b1 PHD_FILE: MSMg01no531_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:17 2005
         (424 letters)



>mm_chr1_61249553_61250376
          Length = 824

 Score =  764 bits (395), Expect = 0.0
 Identities = 416/423 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacagtcccagagaagtccctgggtgaatgaagacttcatgttgcagaagggctagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gaacagtcccagagaagtccctgggtgaatgaagacttcatgttgcagaagggctagtgt 128

                                                                       
Query: 61  gtttggagaacccaagaaaggtgaagtagttaatattgcgtatcaatgtcgctgaacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gtttggagaacccaagaaaggtgaagtagttaatattgcgtatcaatgtcgctgaacctg 188

                                                                       
Query: 121 aatcaactagcaggcaaggcattgggcacttgtgaaaattttattgatgagttttgctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aatcaactagcaggcaaggcattgggcacttgtgaaaattttattgatgagttttgctga 248

                                                                       
Query: 181 agccagaagacctgcctactgcgcttggcccatttcctggatcatggactgtataagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agccagaagacctgcctactgcgcttggcccatttcctggatcatggactgtataagaat 308

                                                                       
Query: 241 ggagaaagtgaggtgtgcactagtctatatgcaccaatgcaccactctctgctctagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggagaaagtgaggtgtgcactagtctatatgcaccaatgcaccactctctgctctagtgt 368

                                                                       
Query: 301 gcactagtctatatgcaccaatgcaccactctctgctctagtgtgcactaatatgtatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcactagtctatatgcaccaatgcaccactctctgctctagtgtgcactaatatgtatgc 428

                                                                       
Query: 361 accaatgcatcactctctgctctagtgtgcactagtcgatatacaccaatacactgctct 420
           |||| |||||||||||||||||||||||||||| ||| |||| ||||||| |||  ||||
Sbjct: 429 accagtgcatcactctctgctctagtgtgcactcgtctatatgcaccaatgcaccactct 488

              
Query: 421 ctg 423
           |||
Sbjct: 489 ctg 491



 Score =  219 bits (113), Expect = 4e-61
 Identities = 157/173 (90%), Gaps = 4/173 (2%)
 Strand = Plus / Plus

                                                                       
Query: 253 gtgtgcactagtctatatgcaccaatgcaccactctctgctctagtgtgcactagtctat 312
           |||||||||| | | ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 629 gtgtgcactaatatgtatgcaccaatgcaccactctctgctctagtgtgcactaatatgt 688

                                                                       
Query: 313 atgcaccaatgcaccactctctgctctagtgtgcactaatatgtatgcaccaatgcatca 372
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 689 atgcatcaatgcaccactctctgctctagtatgcactaatatgtatgcaccaatgcatca 748

                                                                
Query: 373 ctctctgctctagtgtgcactagtcgat--atacaccaatacactgctctctg 423
           ||||||||||||||||||||| ||  ||  || ||||||| || |||||||||
Sbjct: 749 ctctctgctctagtgtgcacttgt--atgcatgcaccaatgcattgctctctg 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)