BAC Information

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BAC

Clone NameMSMg01-531O11
Chromosome1 (Build37)
Map Location 6,757,283 - 6,757,793
singlet/doubletsinglet
Overlap geneSt18
Upstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531O11.T7 (MSMg01no531_o11.b1)MSMg01-531O11.TJ (MSMg01no531_o11.g1)
ACCAG600191AG600192
length751755
length of high quality
(start - end)
511 (158 - 668)628 (77 - 704)
definitionCHROMAT_FILE: MSMg01no531_o11.b1 PHD_FILE: MSMg01no531_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:41 2005CHROMAT_FILE: MSMg01no531_o11.g1 PHD_FILE: MSMg01no531_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCCCTCTCTCATGTTGGGGGCATTTTTCAGAATGGCTAGGGAA
AGTTAATAGCACCGTGTTGCAGGATAATAGACTTGAACTATGTGAATGCT
TGCCCATGGGAGTGGCTTCCTCAAAAATATGTGATATGTTTCATCATTTT
AACCCTCACATGCTACTGATCTCTCTTAATCTAGTTATTTGTGTAGCACA
CAGAGCTAGGTTTGCATGAGCTGAGCCACTTTATATGCAGCGGAGATCCT
CCTGGGAGGAGGGGATTTCACAATACAGTCCAAGCCATCCTGAGTAAACC
AAGCCCTTTTAATCCTAGGCAGTGTCGCATCTGTCATAAACTCATATGGC
TTCAAAAGAAAGAAAATAAACAGGAAAAAAACACCTCTGTTTTATTGTTT
TCTCTTATTGTGTACTTTTAAAATATTTATAACAATGAACCATTTTATTT
AGACTAAAGTGGCTGCTGTTCAGCCAAAGCTATGAACACTTTTTGTTTGC
TAATTTTAAACGCAGTTCAATGATTGGTGCGGTGCTTATTATGAAGCAAT
GACAAAAGAGTTCTGGTGGGCTTAATAGTTTTAGCTTACGAGAGCTGTTG
TTAATTTCATCTCTAGTGTTGCAGGTGAAAAAATGCACAATGGATAAATA
GTCTATATTAGTTTAACTGAACATAATATATAGTGTCGTCCGGAGTTGTT
T
CCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGTACCCCATTT
CTTAATAGGGTTATTTGTTTCTCTGAAGTCTATCTTCTTGAGTTCTTTGT
ATATATTGGACATTAGCCCTCTATCAGATGTAGGATTGGTAAAAATCTTT
TACCAATCTGTTAGCTGCCTTTTTGTTCTATTGGCAGTGTCCTTTGCCTT
ACAGAAGCTTGGAAATTTTATGAAGTTCCATTTGTTGATTCTTGATCTTA
TAGCACAAGCCATTGATGTTCTGTTCAGGAAGTTTTCCCTGTGCCTGTGT
GTTTGAAGCTCTTCCACACTTTCTCCTCTATAAGTTTCAGTGTCTTTGGA
TTTATGTGGAGGTCCTTGACCAATTGGACTTGATCTTTGTACAATGTGAT
AAGACTAGGTCGATTTGTATTCTGCATACTGACCTCTAGTTGAACAAGCA
CCATTTGTGGAAAATGCTGTCTTTTTTCCACTGGATAGTTTTTAATTCCT
TTGTCAAAGATCAAGTGACCACATGTGTGTGGGTTCATTTCTGGGTCTTC
AATTCCTTTCCATTTATCTTCCTTCCTGTCTCTGCACCAACACAATGCAG
TTTTTATCACTATTGCTCTGCAATATTGCTTGATGTCAGGAATGGTGATT
CCCCCAGAAGTTCTTTATTGTTGAAAATAGTTTTTGATATCCTGGGTTTT
TTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_o11.b1 MSMg01no531_o11.b1 CHROMAT_FILE:
MSMg01no531_o11.b1 PHD_FILE: MSMg01no531_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:41 2005
         (511 letters)



>mm_chr1_6757083_6757993
          Length = 911

 Score =  973 bits (503), Expect = 0.0
 Identities = 509/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggagtggcttcctcaaaaatatgtgatatgtttcatcattttaaccctcacatgctact 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggagtggcttcctcagaaatatgtgatatgtttcatcattttaaccctcacatgctact 260

                                                                       
Query: 61  gatctctcttaatctagttatttgtgtagcacacagagctaggtttgcatgagctgagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctctcttaatctagttatttgtgtagcacacagagctaggtttgcatgagctgagcc 320

                                                                       
Query: 121 actttatatgcagcggagatcctcctgggaggaggggatttcacaatacagtccaagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttatatgcagcggagatcctcctgggaggaggggatttcacaatacagtccaagcca 380

                                                                       
Query: 181 tcctgagtaaaccaagcccttttaatcctaggcagtgtcgcatctgtcataaactcatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgagtaaaccaagcccttttaatcctaggcagtgtcgcatctgtcataaactcatat 440

                                                                       
Query: 241 ggcttcaaaagaaagaaaataaacaggaaaaaaacacctctgttttattgttttctctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcttcaaaagaaagaaaataaacaggaaaaaaacacctctgttttattgttttctctta 500

                                                                       
Query: 301 ttgtgtacttttaaaatatttataacaatgaaccattttatttagactaaagtggctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgtacttttaaaatatttataacaatgaaccattttatttagactaaagtggctgct 560

                                                                       
Query: 361 gttcagccaaagctatgaacactttttgtttgctaattttaaacgcagttcaatgattgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcagccaaagctatgaacactttttgtttgctaattttaaacgcagttcaatgattgg 620

                                                                       
Query: 421 tgcggtgcttattatgaagcaatgacaaaagagttctggtgggcttaatagttttagctt 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tgcggtgcttattatgaagcaatgacaaaagagttctggtgggtttaatagttttagctt 680

                                          
Query: 481 acgagagctgttgttaatttcatctctagtg 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 acgagagctgttgttaatttcatctctagtg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)