NCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGAGGGGTTTGCAGACACCATGGCCTCTTTTCAAGAAAGCAAC
ATTCAGAGGCCTAGGGATTTAGTTGGCTGGTAGACTCTAGGCATACATAA
GATCTGGGCTCAGTCCCCAGCACTTCAGAAACACAGCACAGAGTATGCAC
CTATGTCACTCAGGAGATGGAGGCAGGAGGATCAGAAGGCCAAGTTATTT
TAGGCTATATAAAGAGTTTGAGGCCAACTTGAGCCACATGAGACCCTTTC
TCCAAAATGGAAGGAAGGAAGGGAGAAATGAAGGAAGGAAGAAAAATGGA
AATGGCACCAGAGTCATTACAGGTGGAGGAAACAACAAGAGTGCACAGAC
CCTCTGAGGGCCAGTGGAAGATTAGGCAAATTCTTATTCTTTGGTTATAA
TCAGGAAGTGTGGTAGAAAATTATCTCTGGGACTTGAAAGATAGTTCAGC
GGTTAAAAGCACTCATAGTTGTTTTTCCTGGGATTGGGAGTTCAATTTCC
AGCACACAAGGCAGCTCACAACTTTCTGCAATCCAACGCTAAGTGATTTG
ATACCCTTACATAGACATACATGCAGGCAAAACACCAAGGCATGCATATA
TATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATA
CATATATATATATATATATATATATACACATTTACATATACACATATATA
TACATATGTTGTCTC

NCCATTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGGAGCTGTCTTTAAAATGGAG
GAAGAAAAGATAAAAGGGAAGAGGAGAGGAAGGGGAGAGGACATATTAGA
TCTCTGATTCCTGACCCACCAAGATGGATGGAGCTACAGCCTCACACGCC
CACTGTGATGAGCCTAGTCAATCTAGCTGCCATTTGCCCCACAATGGTGG
GCAATAATAAAAGGAAGCCTCTCCTCCTTTAAGTTTGTCCTGCCAAGTAT
TTTGTTAACACAATGAGAAAAATGATCAATATGGAAAATTTGTAACACAG
GGCAGTGCTGTTGCTGGGGTAACACTGACCATGGGATTCTGAGACCTTCA
AAATGGATTTACAGAAGGGCTGGAGGAGAGTTTAGGGCTCTGAGCTAGAG
AAGCCCAACAATGCTGGGTATAGAGATTAATGGAACTCTATGGAGGAAGT
GTACAAGACCAGAATGCTGCTAGAAACAAAATCTGTAAGTATCACGCTCC
TGGCACCCACCATAGGAAGAAGACTCTACAGGAAAATGAGATATAGGCCA
TTTGTAGATATACTCTAGGAAGAGATAGTCTGGCTATATTCTGCCCACAT
CCTGGACGTTGACCAAGGCTGACTTGAGACTTGATAGAAGAGTCCAGGCA
TTGTGGTGTACACCTTTTAGGTTCAGGAGTCAGAGGCAAGGCAGTTTCAA
CAAGTTTAAGN

Query= MSMg01no531_o23.b1 MSMg01no531_o23.b1 CHROMAT_FILE:
MSMg01no531_o23.b1 PHD_FILE: MSMg01no531_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:43 2005
         (656 letters)



>mm_chr1_170327204_170328259
          Length = 1056

 Score = 1237 bits (640), Expect = 0.0
 Identities = 649/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagaggggtttgcagacaccatggcctcttttcaagaaagcaacattcagaggc 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaggggaaagcagacaccatggcctcttttcaagaaagcaacattcagaggc 264

                                                                       
Query: 65  ctagggatttagttggctggtagactctaggcatacataagatctgggctcagtccccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagggatttagttggctggtagactctaggcatacataagatctgggctcagtccccag 324

                                                                       
Query: 125 cacttcagaaacacagcacagagtatgcacctatgtcactcaggagatggaggcaggagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacttcagaaacacagcacagagtatgcacctatgtcactcaggagatggaggcaggagg 384

                                                                       
Query: 185 atcagaaggccaagttattttaggctatataaagagtttgaggccaacttgagccacatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcagaaggccaagttattttaggctatataaagagtttgaggccaacttgagccacatg 444

                                                                       
Query: 245 agaccctttctccaaaatggaaggaaggaagggagaaatgaaggaaggaagaaaaatgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaccctttctccaaaatggaaggaaggaagggagaaatgaaggaaggaagaaaaatgga 504

                                                                       
Query: 305 aatggcaccagagtcattacaggtggaggaaacaacaagagtgcacagaccctctgaggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatggcaccagagtcattacaggtggaggaaacaacaagagtgcacagaccctctgaggg 564

                                                                       
Query: 365 ccagtggaagattaggcaaattcttattctttggttataatcaggaagtgtggtagaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagtggaagattaggcaaattcttattctttggttataatcaggaagtgtggtagaaaa 624

                                                                       
Query: 425 ttatctctgggacttgaaagatagttcagcggttaaaagcactcatagttgtttttcctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatctctgggacttgaaagatagttcagcggttaaaagcactcatagttgtttttcctg 684

                                                                       
Query: 485 ggattgggagttcaatttccagcacacaaggcagctcacaactttctgcaatccaacgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggattgggagttcaatttccagcacacaaggcagctcacaactttctgcaatccaacgct 744

                                                                       
Query: 545 aagtgatttgatacccttacatagacatacatgcaggcaaaacaccaaggcatgcatata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagtgatttgatacccttacatagacatacatgcaggcaaaacaccaaggcatgcatata 804

                                                               
Query: 605 tatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatataca 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatataca 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)