Query= MSMg01no532_b03.b1 MSMg01no532_b03.b1 CHROMAT_FILE:
MSMg01no532_b03.b1 PHD_FILE: MSMg01no532_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:54 2005
(666 letters)
>mm_chr1_193142973_193144039
Length = 1067
Score = 977 bits (505), Expect = 0.0
Identities = 523/529 (98%), Gaps = 1/529 (0%)
Strand = Plus / Minus
Query: 5 gaattccatcaaggggaagtgctgcctgagattggcaggctcaagggaagggagagc-cg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 529 gaattccatcaaggggaagtgctgcctgagattggcaggctcaagggaagggagagcagg 470
Query: 64 ggatccgctgtgagcatccattccctgccttagaccacagcagccatcaaactccagctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggatccgctgtgagcatccattccctgccttagaccacagcagccatcaaactccagctt 410
Query: 124 ccctcccaagattccagcctcttatttcatagctccagacatgtgagccacgcctcctcc 183
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 409 ccctcccaagattctagcctcttatttcatagctccagacatgtgagccacacctcctcc 350
Query: 184 tccctgtggctggtcttctctgccacaggtctcagcctcagcctctgtcacctgtgtggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tccctgtggctggtcttctctgccacaggtctcagcctcagcctctgtcacctgtgtggc 290
Query: 244 cagcagtctgctttcctgttggatacagctaagaaataaatactaggaaacattattgga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagcagtctgctttcctgttggatacagctaagaaataaatactaggaaacattattgga 230
Query: 304 aaataatttctacattctttttaaattttacttatgtgtatggctgttttgcttgtgtac 363
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 229 aaataatttctacattctttttaaattttacttatatgtatggctgttttgcttgtatac 170
Query: 364 cacatttgtacctggtgcctgcagaggccagaaagggtgtcagggcccctgggactggag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cacatttgtacctggtgcctgcagaggccagaaagggtgtcagggcccctgggactggag 110
Query: 424 ttacaaatgcttgtgaactgccgtgtaagtgtagaatccaggacctctgggagaacaggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ttacaaatgcttgtgaactgccgtgtaagtgtagaatccaggacctctgggagaacaggc 50
Query: 484 agcgcatttcatgtggtcaggagaaattgcaggaagaatcttttggctt 532
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 agcgcatttcatgtggtcaggagaaattgcaggaagaatcttttggctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_b03.g1 MSMg01no532_b03.g1 CHROMAT_FILE:
MSMg01no532_b03.g1 PHD_FILE: MSMg01no532_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:54 2005
(630 letters)
>mm_chr1_193012861_193013890
Length = 1030
Score = 1187 bits (614), Expect = 0.0
Identities = 626/630 (99%)
Strand = Plus / Plus
Query: 1 cagaccagtacctgtccctgtatcaaagaaaacccagctggcctcaaaaccatagagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaccagtacctgtccctgtatcaaagaaaacccagctggcctcaaaaccatagagatc 260
Query: 61 catctgcctctgcctccagagtgttgggattagaggcaggcatcaacacaccggcttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 catctgcctctgcctccagagtgttgggattagaggcaggcatcaacacacgggcttctc 320
Query: 121 tttcctctctttgtgcatttgtctcataaacccccaaagttgtcagaaatgactacagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctctctttgtgcatttgtctcataaacccccaaagttgtcagaaatgactacagac 380
Query: 181 cctagtggaaagtttcatctcagaataactgactgatttgaaaagaaatatttgtttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagtggaaagtttcatctcagaataactgactgatttgaaaagaaatatttgtttaaa 440
Query: 241 aagatcagtatgtggcctggtcacaactactatttactcagaacacgttacctgcaaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatcagtatgtggcctggtcacaactactatttactcagaacacgttacctgcaaggc 500
Query: 301 acattgtaactctcgaaaaatacaagtgtcttatttgatcttcatactaattctgtcggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattgtaactctcgaaaaatacaagtgtcttatttgatcttcatactaattctgtcggg 560
Query: 361 ctggtactattttctcagttttatagactaggagagcaagcccagaaaggttaaagaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggtactattttctcagttttatagactaggagagcaagcccagaaaggttaaagaaaa 620
Query: 421 gtgcttgtcagtggttgagtccaacacaggtctgtctggtggactgtaagacttctgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcttgtcagtggttgagtccaacacaggtctgtctggtggactgtaagacttctgctg 680
Query: 481 ggcatccttgccctctgggtcctagagagcttcgcctgggcttatttccttgaactgtgt 540
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcatccttgccctctgggtcccagagagcttcgcctgggcttatttccttgaactgtgt 740
Query: 541 ggttggtctgtgttaaacaggtccttcctacccagcctcctgagtgccagatggtcgttg 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 ggttggtctgtgttaaacaggtccttcttacccagcctcctgagtgccagatggtcgttg 800
Query: 601 accttaccaggaaaacctactcccaaaatt 630
||||||||||||||||||||||||||||||
Sbjct: 801 accttaccaggaaaacctactcccaaaatt 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
