BAC Information

Click to search

BAC

Clone NameMSMg01-532B22
Chromosome1 (Build37)
Map Location 140,693,531 - 140,693,936
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
Downstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532B22.T7 (MSMg01no532_b22.b1)MSMg01-532B22.TJ (MSMg01no532_b22.g1)
ACCAG600355AG600356
length741748
length of high quality
(start - end)
418 (54 - 471)621 (83 - 703)
definitionCHROMAT_FILE: MSMg01no532_b22.b1 PHD_FILE: MSMg01no532_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:57 2005CHROMAT_FILE: MSMg01no532_b22.g1 PHD_FILE: MSMg01no532_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAAAACAACTTCCACAAACAAACAAACAAACAGCAAC
AGCCCTGATTATGAGAAAGGAGAAAAGAAGAAATGATCATAGCAGTACTT
TGTGTTAATGAGGAGAAAATAGACCCCTTCTCTCTCTCTCCCAACCCTGG
TATTCAAGAAACAAGAGGAAAAGGCCTGGCGGCTGTTAAAAAAAAATGAC
TCCTTTTAATCATAGGCTTGCTACTTTTAAAATATCTTTTTAAGTTTTCA
ACCACAGGCTATAACTGTACATGTTTATGGGGCACAGTTCAATAGTTCAG
TTTATGTGGATATTGTTTGATGATCAACTCAGAGTATTTAGATGACCTAG
CATCTCAAACACTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCACTCGCGCGCTCTCGCGCTCACGGCT
TTTGGAAGAGAATCTACACAGCTTTCTCCCCGCGAGATTTGAATCCATAT
GTTAGTGGCCACTAAATCCTGACTTCCTATCGGATGTGTGCTTACAACTT
CTAAAGCCGCGACCCAACCCGATAGGTATGCGAACACTCCTTTAAGACGC
ACTGTTGGACCCTCTGAAGATCTGATATTTGCGACCTAAATGAGATTGTT
TGCGCAAAAACCAGTAAGCTAGTATTGGCCATCACACTGAG
NNNNNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGATCATCTTGTGAAA
ACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTAC
CACATAAGGATTTTTATTCAAGAAAAATAAATGAATTAAGTCTTTAAAAA
AAAAAAAAAAGCCAGGCTCAGCACTCTGGAGGCAGAGGCAGGCGGATTTC
TGAGTCTGAGGACAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAG
CTATACAGAGAGACCCTGTCTCAAAAAAATATTTTTTTTAAATAATAATA
GTAAAATAATTTTTTAAAAGTAGCCAACTCATTATAAGGAATATAAAATT
AAGCTAAATATTATAGAATAGTAAAAATACCTTTACTGGCATAAAGAAAA
AAGATCAGAAGAATGAAGAAACAAAGAGCCACTGGACTAAAACAAACTAA
AGAACCATATAGAATACATAGAACTTAAAAACAACAACATCTTTGAGTCA
AACAAGTCACTCCGTGGGTCTAACAGCAGACTGGCAGCTACTGTGTAGAT
CAGAGAGCCTGAACAGAGTGGGAGGAACTACACAAACCAAAGCAGCAGCG
CATAGGGACTCCAAGTGAGCAAAGGGCCACCAAGGCTTGAGGAGTGGCAT
CAGATAGGCTAACAAGCAAGAGCTGTGTATGTTCCCAATACACATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_b22.b1 MSMg01no532_b22.b1 CHROMAT_FILE:
MSMg01no532_b22.b1 PHD_FILE: MSMg01no532_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:57 2005
         (418 letters)



>mm_chr1_140693308_140694129
          Length = 822

 Score =  636 bits (329), Expect = 0.0
 Identities = 384/407 (94%), Gaps = 13/407 (3%)
 Strand = Plus / Plus

                                                                       
Query: 24  acaaacaaacaaacaaacagcaacagccctgattatgagaaaggagaaaagaagaaatga 83
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 224 acaaacaaacaaacaaacagcaacaaccctgattatgagaaaggagaaaataagaaatga 283

                                                                       
Query: 84  tcatagcagtactttgtgttaatgaggagaaaatagac-cc--ct-tctctctctctccc 139
           |||||||||||||||||||||||||||||||||||||| ||  || ||||||||||||||
Sbjct: 284 tcatagcagtactttgtgttaatgaggagaaaatagactccttctctctctctctctccc 343

                                                                       
Query: 140 aaccctggtattcaagaaacaagaggaaaaggcctggcggctgtt-------aaaaaaaa 192
           |||||||||||||||||||||||||||||||||||||||||| ||       ||||||||
Sbjct: 344 aaccctggtattcaagaaacaagaggaaaaggcctggcggctattaaaaaagaaaaaaaa 403

                                                                       
Query: 193 atgac-tccttttaatcataggcttgctacttttaaaatatctttttaagttttcaacca 251
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atg-cttccttttaatcataggcttgctacttttaaaatatctttttaagttttcaacca 462

                                                                       
Query: 252 caggctataactgtacatgtttatggggcacagttcaatagttcagtttatgtggatatt 311
           ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 463 cagactatatctgtacatgtttatggggcacagttcaatagttcagtttatgtggacatt 522

                                                                       
Query: 312 gtttgatgatcaactcagagtatttagatgacctagcatctcaaacactctctctctctt 371
           |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| 
Sbjct: 523 gtttgatgatcaactcagggtatttagatgacctagcatctcaaacacactctttctctc 582

                                                          
Query: 372 tctctctctctctctctctctctctctctctctctctctctctctct 418
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tctctctctctctctctctctctctctctctctctctctctctctct 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 822
Length adjustment: 9
Effective length of query: 409
Effective length of database: 813
Effective search space:   332517
Effective search space used:   332517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)