Query= MSMg01no532_i07.b1 MSMg01no532_i07.b1 CHROMAT_FILE:
MSMg01no532_i07.b1 PHD_FILE: MSMg01no532_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:27 2005
(555 letters)
>mm_chr1_28641685_28642646
Length = 962
Score = 853 bits (441), Expect = 0.0
Identities = 522/557 (93%), Gaps = 17/557 (3%)
Strand = Plus / Plus
Query: 7 ggaattcagaatt-aaattatctgagtaattttattatgagagagctaatagtcttcaaa 65
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcagaattaaaaatatttgagtaattttattatgagagagctaatagtcttcaaa 266
Query: 66 caatataaatggcatttaatatttagttgtcaatcacacacacacttccaattgaaattt 125
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 caatataaatggcatttaatatttagttgtcaatcacacacacacttccagttgaaattt 326
Query: 126 catatcaagatattccctatgt-----tt-aaaaaaaaaagcatgcttgccaattccacc 179
||||||| |||||| ||||||| || ||||||||||||||||||| ||
Sbjct: 327 catatcaggatatttcctatgttaaaattaaaaaaaaaaagcatgcttg---------cc 377
Query: 180 aattcctagggaagatttcagagagcacagaggaaagtctctaaaagtagaagctgatgt 239
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 378 aattcctagggaagatttcagagaacacagaggaaagtctctaaaagtggatgctgatgt 437
Query: 240 atccaaatgagttaagcaacctcaatcatgatcactcctgcaactcttacatttagaaga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atccaaatgagttaagcaacctcaatcatgatcactcctgcaactcttacatttagaaga 497
Query: 300 atgcagcttgatgaaggccaccccctgtggattccattttgttcttctttaaagcaaagg 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 atgcagcttgatgaaggccaccccctgtggattccattttgttcttgtttaaagcaaagg 557
Query: 360 gtatccaaatatcacacaactgatgaatgcatagttgagttgcagctacagaggaagaag 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 558 gtatccaaatatcacacaactgatgaatgcatagttgagttgcagctacagaggaagatg 617
Query: 420 atttgttttatttattgttttaaagtggcagcagtaaatcacaactttgcattatctatt 479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atttgttttatttatttttttaaagtggcagcagtaaatcacaactttgcattatctatt 677
Query: 480 gccttcactggagcaactttatagaattattttt-aggcatttttctgaaatcttaactt 538
| |||||||||| || ||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct: 678 ggtttcactggagaaaatttatagaattattttttaggcattgttctgaaatcttagctt 737
Query: 539 tcaccttggattgcaca 555
||||||||| |||||||
Sbjct: 738 tcaccttggtttgcaca 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 962
Length adjustment: 10
Effective length of query: 545
Effective length of database: 952
Effective search space: 518840
Effective search space used: 518840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_i07.g1 MSMg01no532_i07.g1 CHROMAT_FILE:
MSMg01no532_i07.g1 PHD_FILE: MSMg01no532_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:27 2005
(612 letters)
>mm_chr1_28775276_28776287
Length = 1012
Score = 969 bits (501), Expect = 0.0
Identities = 521/531 (98%), Gaps = 6/531 (1%)
Strand = Plus / Minus
Query: 4 acattggaatgcttgttgagggatgtatggaagtcattgctgatagatagcatcttttcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 acattggaatgcttgttgagggatgtatggaagtcattgctgatagatagcatcttttcc 472
Query: 64 actataaatgcctccctcactattgaggttagagtctgatctggtctagtattaccataa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 actataaatgcctccctcactattgaggttagagtctgatctggtctagtattaccataa 412
Query: 124 tacctctcccaatttagacacaaatggtatttgactgtacaaagtcctgtaaatattgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tacctctcccaatttagacacaaatggtatttgactgtacaaagtcctgtaaatattgat 352
Query: 184 ccagattttcagtagagctctacaattccttctcaaacaaatatttttgagattacaatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccagattttcagtagagctctacaattccttctcaaacaaatatttttgagattacaatt 292
Query: 244 tagtcaaataatttaagctttattttctttctataactccaatgaacttatctttgtgct 303
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 291 tagtcaaataatttaagctttattttctttctccaactccaatgaacttatctttgtgct 232
Query: 304 gattataattaatattttccttaattac------gtgtgtgtgtgtgtgtgtgtgtgtgt 357
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 231 gattataattaatattttccttaattacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 172
Query: 358 gtgtgtgtgccagtacccatgtgcacatgtgtttctttttaagtggccattaacttagag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 171 gtgtgtgtgccagtacccatgtgcacatgtgtttctttttaagtggccattaactcagag 112
Query: 418 tgcaaggataccctaaaatcaaagttggaatcttctttccatcttctcacttcttgaata 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tgcaaggataccctaaaatcaaagttggaatcttctttccatcttctcacttcttgaata 52
Query: 478 gggagtgtcctccataactcaagagaagcacaaggagcatctatttgaatc 528
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 51 gggagtgtcctccataactcaggagaagcacaaggagcatctatttgaatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
