Query= MSMg01no532_l15.b1 MSMg01no532_l15.b1 CHROMAT_FILE:
MSMg01no532_l15.b1 PHD_FILE: MSMg01no532_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:43 2005
(648 letters)
>mm_chr1_72319629_72320675
Length = 1047
Score = 1133 bits (586), Expect = 0.0
Identities = 631/646 (97%), Gaps = 4/646 (0%)
Strand = Plus / Plus
Query: 5 gaattcactagggttcactgtgagaaggggagggaggtggggagacctacctgccttgaa 64
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 204 gaattcactagggttcactgtgagaaggggaggggggtggggagacctatctgccttgaa 263
Query: 65 ggtaggcagtgtcatcccaagaagtgagg-taaaggacaaaggagcagctggctgagtac 123
||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 264 ggtgggcagtgtcatcccaagaggtgaggataaaggacaaaggagcagctggctgagtac 323
Query: 124 cagcatcttctgatctctgcttcctggctcactgtgatggatgcaagtcctctgaaacca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagcatcttctgatctctgcttcctggctcactgtgatggatgcaagtcctctgaaacca 383
Query: 184 ggagcccaaacaaaccct-ccgcccactaagccttctctaccaggaattgtggttagaga 242
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 ggagcccaaacaaacccttcc-cccactaagccttctctgccaggaattgtggttagaga 442
Query: 243 gacaaagagtaactgatactctccacaactgaaggaatcctagataatacatgaagctag 302
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 gacaaagagtaaccgatactctccacagctgaaggaatcctagataatacatgaagctag 502
Query: 303 tatgttattaaaatttccatagaggaagtcaacttgttactagttagaactacaattcct 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aatgttattaaaatttccatagaggaagtcaacttgttactagttagaactacaattcct 562
Query: 363 caggaattctgtgtgtttttcagaaactcagagtttctgatatctaaatgagtccagatc 422
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caggaattctgtgtgtgtttcagaaactcagagtttctgatatctaaatgagtccagatc 622
Query: 423 tatttaattttcataatttaacaaagaagctatttcccacagtgacagctagatttgtaa 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatttaattttc-taatttaacaaagaagctatttcccacagtgacagctagatttgtaa 681
Query: 483 tatttcagttacttggcagaaaagatacaggacctccaggtaatatgaatttcagataaa 542
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 682 tatctcagttacttggcagaaaagatacagggcctccaggtaatatgaatttcagataaa 741
Query: 543 tgacaaaagtgtacacctccaggaaacctcaagcccactgccggtgacacaccatctccc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgacaaaagtgtacacctccaggaaacctcaagcccactgccggtgacacaccatctccc 801
Query: 603 aaggccacgcccactccaaagaggccacacctctgaattcttctca 648
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaggccacgcccactccaaagaggccacacctctgaattcttctca 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_l15.g1 MSMg01no532_l15.g1 CHROMAT_FILE:
MSMg01no532_l15.g1 PHD_FILE: MSMg01no532_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:44 2005
(578 letters)
>mm_chr1_72511573_72512550
Length = 978
Score = 1029 bits (532), Expect = 0.0
Identities = 547/552 (99%)
Strand = Plus / Minus
Query: 1 tttgaaacagaaaataaaattgccaagataacagcagccacagtgacttggagccgctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttgaaacagaaaataaaattgccaagataacagcagccacagtgacttggagccgctta 494
Query: 61 ctttggagcccgcagcctggagtctattcacacgccagagtcattcaaattcgcttagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctttggagcccgcagcctggagtctattcacacgccagagtcattcaaattcgcttagca 434
Query: 121 tgctttctgctgacaaggagcggcagccaagatttcaggaatagtatgctttcccgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgctttctgctgacaaggagcggcagccaagatttcaggaatagtatgctttcccgagag 374
Query: 181 gcgtgaaaataaccgagctgggtttgcagcagactctggcatgggcaaggtcctgcaggg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcgtgaaaagaaccgagctgggtttgcagcagactctggcatgggcaaggtcctgcaggg 314
Query: 241 aagtggggccttgtcttgggagcatggaacctgaacagggctcagaaagaggaaggaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagtggggccttgtcttgggagcatggaacctgaacagggctcagaaagaggaaggaatc 254
Query: 301 tcttctgtgccatgggatcctcctaagagctttaggttgatctgtgtaagtctgcggttc 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 253 tcttctgtgccatgggatcctcctaagggctttaggttgatctgtgtaagtctgccgttc 194
Query: 361 aacctgtgggtcatgacacccctgagggtcacgggtcagatatcccacatatcagatgtt 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 193 aacctgtgggtcatgacacccctgagagtcacgggtcagatatcccacatatcagatgtt 134
Query: 421 tacattatgattcataaaagtagcaaacttgcagttatgaagtaacaaccaaatactttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tacattatgattcataaaagtagcaaacttgcagttatgaagtaacaaccaaatactttt 74
Query: 481 atggctgaaggtcagcacaacgtgaggaactgtgttaaagggctgcagtgttaagggagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 73 atggctgaaggtcagcacaacgtgaggaactgtgttaaagggctgcagtgttaggggagt 14
Query: 541 tgagaaccacag 552
||||||||||||
Sbjct: 13 tgagaaccacag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
