CCTTTTTTTTTTTTATTTGGTCCGCTATACGACTCACTATATTTCGAGGA
TCCGCGGAATTCCTAGACTATAGCATGGAGCCTTTGTGTAAACAAAGGTT
TTACTGGGTAGGGAACTAAAGCATTTTCATAAGTCTTGTAAGGAAAGGGA
GATAAACAGATTTGAATTCCTGGTTTTAAACACAAGTTTTACAGTATTCG
ATAGAAAAAGTCATAGTTGATATTTCTTACACATATTTACATTGTTACTC
CAAAGTTATGACCTAAATAAGAATACTCTATCAAAGCAAAGGAGCACAGT
AAGACATATGCAGGAAAACAACAAGAAACAAACAAACAAAAGGAGTCTTG
TGGACACACTGAAATATGACAATTCCACCCTACCAAATGACAATAGAATT
TATATGTTGCCTTCTGTCGATCAGGGCATACATTAGTACTAAGGCTAAGA
GAATAAATACTTCTTTTAGAAATGGAGCCAATTCAGATGCTTTCTGCATT
GGAATCCCTTGACTATAATGGAATGTGCTATTGACCATAAGTATTCACTA
TCATTCCCTAAGGAATGAATACATTCTTCTGTTTTGAGCAAACAGTAGCA
GATTAAGATGTGTCTCTTCTCGGCAGTCAGCCTGCGTCAAGTAGAAAGAT
CAGCTCAGGATCCTGGCCAGAACCATCAGTAATCATTTTATTGCCAATGG
TTATATAACGCTTAGCACAAAGCACATATTTATAACCACN

CAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGACAAGCACTGTACCATGGGACTA
CATCCATGACTTCAGGAGATCAGTTTTCTGATTTGATAGTTAAAGTACTT
GCTAAGCTGGATATGTAGTAGTGCATGCCTTTAATCCCAGCACTTAGGAG
GCATGATATCTGAGTTCAAGGCTAGCCTAGCCTACACAGCAAGTTCCAAG
ACTACATAGAGACCCTGACTCACTAATAAGGAAAGGAAGGAAAGAATGAA
GAAAAAAATATTTGCTGTTCTTGCAGAGGACCAGTTTTCTTCCCATCATC
CACAAGACAGCTCACAACTGTCATAACCCCATTTCCAGGGGTTCCCAAGC
ATTTCCTGGCCTGGGGCACTGCACACATGTGGTGCTGTTAAATTACATGC
AAGGCAAAACACTCATGCACAAAAAATATAAAATTTGAAAGAAAAAATAT
TTCTGGGTTATATTTTATTTGGAGTTCTAGTTTCACACGGGAAAGAATTT
AGAATGAACAAATCTTGTGGCCTTGTGTTCTTAAATCCTTGAAATGTTTT
CACAGGGGATGATGAGCAATCTATACAAATGGCTGCAAGTTGGGAAGATG
AAAAAGTGACACAAGCATCATCCAACAACTTTGTTGCTTATAAAAATGAT
ACTAACAGGTATGCTTATGCGCTAATGCTTCATTACTTACTTTGTAAAGA
TT

Query= MSMg01no533_b17.b1 MSMg01no533_b17.b1 CHROMAT_FILE:
MSMg01no533_b17.b1 PHD_FILE: MSMg01no533_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:14 2005
         (685 letters)



>mm_chr1_130314909_130315994
          Length = 1086

 Score = 1276 bits (660), Expect = 0.0
 Identities = 675/680 (99%), Gaps = 1/680 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctagactatagcatggagcctttgtgtaaacaaaggttttactgggtagggaac 66
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattcctagtctagagcatggagcctttgtgtaaacaaaggttttactgggtagggaac 827

                                                                       
Query: 67  taaagcattttcataagtcttgtaaggaaagggagataaacagatttgaattcctggttt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 taaagcattttcataagtcttgtaaggaaagggagataaacagatttgaattcctggttt 767

                                                                       
Query: 127 taaacacaagttttacagtattcgatagaaaaagtcatagttgatatttcttacacatat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 taaacacaagttttacagtattcgatagaaaaagtcatagttgatatttcttacacatat 707

                                                                       
Query: 187 ttacattgttactccaaagttatgacctaaataagaatactctatcaaagcaaaggagca 246
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 706 ttacatcgttactccaaagttatgacctaaataagaatattctatcaaagcaaaggagca 647

                                                                       
Query: 247 cagtaagacatatgcaggaaaacaacaagaaacaaacaaacaaaaggagtcttgtggaca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cagtaagacatatgcaggaaaacaacaagaaacaaacaaacaaaaggagtcttgtggaca 587

                                                                       
Query: 307 cactgaaatatgacaattccaccctaccaaatgacaatagaatttatatgttgccttctg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cactgaaatatgacaattccaccctaccaaatgacaatagaatttatatgttgccttctg 527

                                                                       
Query: 367 tcgatcagggcatacattagtactaaggctaagagaataaatacttcttttagaaatgga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcgatcagggcatacattagtactaaggctaagagaataaatacttcttttagaaatgga 467

                                                                       
Query: 427 gccaattcagatgctttctgcattggaatcccttgactataatggaatgtgctattgacc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gccaattcagatgctttctgcattggaatcccttgactataatggaatgtgctattgacc 407

                                                                       
Query: 487 ataagtattcactatcattccctaaggaatgaatacattcttctgttttgagcaaacagt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ataagtattcactatcattccctaaggaatgaatacattcttctgttttgagcaaacagt 347

                                                                       
Query: 547 agcagattaagatgtgtctcttctcggcagtcagcctgcgtcaagtagaaagatcagctc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agcagattaagatgtgtctcttctcggcagtcagcctgcgtcaagtagaaagatcagctc 287

                                                                       
Query: 607 aggatcctggccagaaccatcagtaatcattttattgccaatgg-ttatataacgcttag 665
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 286 aggatcctggccagaaccatcagtaatcattttattgccaatggtttatataacgcttag 227

                               
Query: 666 cacaaagcacatatttataa 685
           ||||||||||||||||||||
Sbjct: 226 cacaaagcacatatttataa 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space:   726300
Effective search space used:   726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)