ACGCGGGTGGTGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAATTGTTTTGGATTTTTCCAGTTCTGGGAAACAC
AAAGTCAGACCCACTCTCCTGAATTGCCAGTTTATAAAAGTTACCAGTTT
CTTTTTTACAGTTCTTTATAGCTATGTGATCTGCAACAGTATCATTAGCT
TAGAAAGCTCATGGGGGAAGACACTTACCAGTACATTCTTGGTTGTATCA
CTGCAGAAATGATACCCATCATTTCTTTCATGATCTATTGATGGTATCTA
GTTGACTGCTCACCCAATTGTAAGAGTCTATTGGATTGTAAATTTGGATC
TACAGAGAATATTTTATATATATTACATGCGGATAGTACAAATTATAGGA
ATAATAAAATCATTTTTCAAACAAAATTTAGAGTAAGAGTACATACTAAA
AGTTCTTAAGTAACATAATGCATACATTCATACACACACACACACATAAA
ATTAATCAATCTAGTTCTTATTGTATGCTTTTTATGGTTGTTTTTATTTT
ATTTGCAATTGTTTATCTTAAACTATTAAATCATCAAAATAATATATTGA
TTATTATGGTTATTATATTTAGGTAGCAACATAACACAGTATTTCTTGGA
ATGATAGATGTCATTTCCTTTTAAAGAACACAATCATATTCTAAAAACCA
TTTATTTATGTCATAAACTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGG
TGGTAACCCGTAAGTATAGCTTTACAAGGTACGCCTGATCTTGAACTTTC
TAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTAT
AAGATATGTTTGGCCTTGAATTTTTTCTAGTGTTAGAAGCCCTTTTGTTC
CTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGGATTCTGGATGAAAT
TCAGGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAAA
GAAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTGAA
CCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAG
GAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATTAGAGAAGCCAGTTC
TTAGTAGTTCTGAATCAGATGAAAAGGCTATTAGGGCCTGGAAGGCGCTC
TCCCGAGCAGGTGAAGCCACTGGACAATAATGACAGAGGCAGGCTCTTGC
AGCCTACAAGGTCTTATTGTCCACCCTGGAGTTGTAGATCAGGATTGTAA
AGGGGAACTTCAGGTTCTCTGTTCTTGTCCTCAAGTTGTCTTTTCTATAT
CACAAGGGGACAAAATAGCTCAACTAATAATTTTGCCAAGCCTACATGGC

Query= MSMg01no533_e05.b1 MSMg01no533_e05.b1 CHROMAT_FILE:
MSMg01no533_e05.b1 PHD_FILE: MSMg01no533_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:25 2005
         (665 letters)



>mm_chr1_97726638_97727702
          Length = 1065

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/464 (98%), Gaps = 4/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaattgttttggatttttccagttctgggaaacacaaagtcagacccactctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaattgttttggatttttccagttctgggaaacacaaagtcagacccactctcc 263

                                                                       
Query: 64  tgaattgccagtttataaaagttaccagtttcttttttacagttctttatagctatgtga 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 tgaattgccagtttataaaagttaccagtttcttttttacagttctttatagttatgtga 323

                                                                       
Query: 124 tctgcaacagtatcattagcttagaaagctcatgggggaagacacttaccagtacattct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgcaacagtatcattagcttagaaagctcatgggggaagacacttaccagtacattct 383

                                                                       
Query: 184 tggttgtatcactgcagaaatgatacccatcatttctttcatgatctattgatggtatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggttgtatcactgcagaaatgatacccatcatttctttcatgatctattgatggtatct 443

                                                                       
Query: 244 agttgactgctcacccaattgtaagagtctattggattgtaaatttggatctacagagaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agttgactgctcacccaattgtaagagtctattggattgtaaatttggatctacagagaa 503

                                                                       
Query: 304 tattttatatatattacatgcggatagtacaaattataggaataataaaatcatttttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tattttatatatattacatgcggatagtacaaattataggaataataaaatcatttttca 563

                                                                       
Query: 364 aacaaaatttagagtaagagtacatactaaaagttcttaagtaacataatgcatacattc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacaaaatttagagtaagagtacatactaaaagttcttaagtaacataatgcatacattc 623

                                                       
Query: 424 atacacacacacacaca----taaaattaatcaatctagttctt 463
           |||||||||||||||||    |||||||||||||||||||||||
Sbjct: 624 atacacacacacacacacacataaaattaatcaatctagttctt 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)