CCCCCCATTTCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAGAATATCTGCCAGGCATTTCTGGACTTCTTTCT
GGTTTTTCACCTTGTTTTGGAGGAGTAGTTCTCAAAAATGTAATAGAAAC
ATGCATTTTTTAATTCCTTTTGTATATACAATCTGAGTATTCTATCTCTA
ATTGTTTTCTAAACCGCTGATACTAAAGTCACCATACCTGTTTGTATATG
TATCATCATTAATTAATGCTGACATTTTATATTCCAATATGTAAGTAGAA
ACTGAATTTACCTTCAAAATCCAATTGTGTTTCCCATTTCCTCAAGTTTT
CTTACTGATTCCTTCAGAGTTTTCTCTTACATATATTAAATGCCATTCTT
TTTTATTTTTATTTTTTCAGAGTCTTTGTTTCATTTATTTACTCCCTTCC
TCATATAGTCCTTTAAAAAAATCCCATTACTTTGATTTTCATAATTATTT
ATCATATTTTTTCTTTCTTTTTATTATTGTATTCATTTACATTCCAATTG
TAGGCCCCTTCTCCAGTCCCCATCCTAAAGTTCTTTACTCCCTCCACCCC
CTTACCTTTGTTACCTTTGCTACTCCCCCATACACCCACCTACACATACC
TTACTCCTACCAGCATCTATCTTCCCTGGTGCATCAAGTTTCTACAGGAT
TTGGCTGATCCTGTCCTACN

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGGAACTCCAAGGATTC
TTTGAGGGTGAGCCTAGGAAAGACTCCTAGTAGTGGGGATTAAAGAACCT
GAACCAGCCATCTTCTGTAACCAGGAAAGATTTCCAGTAGAGGAATTGGG
ACACCAAACTAGTCATAAAATATTCAACCTACTATTTGTCCTGCCTGCAA
GATGTGACTGTAGAATTTGTGGGAATGGCCAGCAAATGGTTAGTACAGTT
TAAGAGCCGTGCAGTGAGAGAGAGCCATGTCTGACACTACCTTGAATGCC
AGCAATCAGAGGCTGCACAGCTTAAAAACCTAGATGTCCCTCAACTGAGG
AATGCATAAAAATGTGGTATATTTATATAATGATATATTACACAAGTTGT
CAGAAAAATGTCACCATGAAATCTGCAGACAAATGATGGAACTAGAAAAA
ATAAACCATCCTGAGTGATGCAACCAGACCTGGAAAGACAAAAATGATAT
GAGCGCTTAAGTAGTTATTAAAGATTAAGTAAAGGATAATCATGAAACAG
TCCATAGACCAAGTGAGGCTAAGTAAGAAGGTGGATTAAGTAAGAAGGAG
ATCACCCTGGGAAGCAGCAATAGAATGAGTTTTGTGGATGAACTGGGGAC
AGCAGGGAAATATGGTCCACAGAATCAACTAAGAAGGAATCATAGT

Query= MSMg01no533_h04.b1 MSMg01no533_h04.b1 CHROMAT_FILE:
MSMg01no533_h04.b1 PHD_FILE: MSMg01no533_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:39 2005
         (664 letters)



>mm_chr1_141764790_141765852
          Length = 1063

 Score = 1191 bits (616), Expect = 0.0
 Identities = 643/652 (98%), Gaps = 1/652 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcagaatatctgccaggcatttctggacttctttctggtttttcaccttgttttggag 66
           |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 651 attcagaatagcagccaggcttttctggacttctttctggtttttcaccttgttttggag 592

                                                                       
Query: 67  gagtagttctcaaaaatgtaatagaaacatgcattttttaattccttttgtatatacaat 126
           |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 591 gagtggttctcaaaaatgtaatagaaacatgca-tttttaattccttttgtatatacaat 533

                                                                       
Query: 127 ctgagtattctatctctaattgttttctaaaccgctgatactaaagtcaccatacctgtt 186
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 532 ctgagtattctatctctaattgttttctaaaccgctgatactaaagtcaagatacctgtt 473

                                                                       
Query: 187 tgtatatgtatcatcattaattaatgctgacattttatattccaatatgtaagtagaaac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgtatatgtatcatcattaattaatgctgacattttatattccaatatgtaagtagaaac 413

                                                                       
Query: 247 tgaatttaccttcaaaatccaattgtgtttcccatttcctcaagttttcttactgattcc 306
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 412 tgaatttaccttcaaaatccaattgtgtttcccatttcctcaagttttcttattgattcc 353

                                                                       
Query: 307 ttcagagttttctcttacatatattaaatgccattcttttttatttttattttttcagag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttcagagttttctcttacatatattaaatgccattcttttttatttttattttttcagag 293

                                                                       
Query: 367 tctttgtttcatttatttactcccttcctcatatagtcctttaaaaaaatcccattactt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tctttgtttcatttatttactcccttcctcatatagtcctttaaaaaaatcccattactt 233

                                                                       
Query: 427 tgattttcataattatttatcatattttttctttctttttattattgtattcatttacat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgattttcataattatttatcatattttttctttctttttattattgtattcatttacat 173

                                                                       
Query: 487 tccaattgtaggccccttctccagtccccatcctaaagttctttactccctccaccccct 546
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 172 tccaattgtaggccccttctccagtccccattctaaagttctttactccctccaccccct 113

                                                                       
Query: 547 tacctttgttacctttgctactcccccatacacccacctacacataccttactcctacca 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tacctttgttacctttgctactcccccatacacccacctacacataccttactcctacca 53

                                                               
Query: 607 gcatctatcttccctggtgcatcaagtttctacaggatttggctgatcctgt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  gcatctatcttccctggtgcatcaagtttctacaggatttggctgatcctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space:   688662
Effective search space used:   688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)