Query= MSMg01no533_i16.b1 MSMg01no533_i16.b1 CHROMAT_FILE:
MSMg01no533_i16.b1 PHD_FILE: MSMg01no533_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:46 2005
(640 letters)
>mm_chr1_150499067_150500104
Length = 1038
Score = 1081 bits (559), Expect = 0.0
Identities = 611/635 (96%), Gaps = 12/635 (1%)
Strand = Plus / Minus
Query: 6 gaattctatgtatctataatgaagaagttgggtatgttgttggtgtttgaatacacttta 65
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 970 gaattcgatgtatctataatgaagaagttgggtatgttgttggtgtatgaatacacttta 911
Query: 66 catactcatgtggattgacacacaagtgtttcaagaggcatttctacatttgtcatgcct 125
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 910 catactcatgtggattgacacacaagtgtttcaagaggcatttctacattagtcatgcct 851
Query: 126 tactctttaatgaaatggttttaaaagacaataagaactcataatctgtttcattcagac 185
| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 850 tgctctttaatg----------aaaagacaataagaactcataatctgttttattcagac 801
Query: 186 ttgttctaattgggaaattgattcaaattcccacatgtaacatatcacctctttaccaaa 245
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttgttctaattggaaaattgattcaaattcccacatgtaacatatcacctctttaccaaa 741
Query: 246 tacatttctatgtgtaaattagaattggaaagacatgctctatgaggtatacttcataag 305
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tacattactatgtgtaaattagaattggaaagacatgctctatgaggtatacttcataag 681
Query: 306 tatttgagatggaaagttggatcaatatctctgcataatagttactattattttatagaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatttgagatggaaagttggatcaatatctctgcataatagttactattattttatagaa 621
Query: 366 gaatataattaagatataattatcaaggtaggacatgaagtaagttagaaagttaagatc 425
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagtataattaagatataattatcaaggtaggacatgaagtaagttagaaagttaagatc 561
Query: 426 taaatacattttatttgacagccagtgccctatttctaaataactctttcttctggatca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaatacattttatttgacagccagtgccctatttctaaataactctttcttctggatca 501
Query: 486 atgctactttcagatgaaacatggcacaagctcctggggttaatgtacctctccagaaat 545
||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 500 atgctactttcaggtgaaacacagcacaagcgcctggggttaatgtacctctccagaaat 441
Query: 546 gcattatagaataagaaaaaaaaaatattctaagggcagaaatctttgggagacctaaat 605
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcattatagaataag--aaaaaaaatattctaagggcagaaatctttgggagacctaaat 383
Query: 606 ttgggacatgtgaagcgatgaccttatggaaggac 640
|||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgggacatgtgaagcgatgaccttatggaaggac 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1038
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1028
Effective search space: 647640
Effective search space used: 647640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_i16.g1 MSMg01no533_i16.g1 CHROMAT_FILE:
MSMg01no533_i16.g1 PHD_FILE: MSMg01no533_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:46 2005
(674 letters)
>mm_chr1_150355365_150356437
Length = 1073
Score = 1164 bits (602), Expect = 0.0
Identities = 656/675 (97%), Gaps = 3/675 (0%)
Strand = Plus / Plus
Query: 1 tttaaac-acanagttaaaatattcccagttttagctaaatagacccatgttaagataat 59
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaacaacaaagttaaaatattcccagttttagctaaatagacccatgttaagataat 260
Query: 60 aagacatgaagcaaaatagttttcaattattgaaaacttcctctgcctcctattagtcat 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aagacatgaagcaaaatagttttcaattactgaaaacttcctctgcctcctattagtcat 320
Query: 120 ggacaatgccatttaaatttaagaaataatgtgtaagtgagttattatttttttaaaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ggacaatgccatttaaatttaagaaataatgtgtaagtgagttattatttttt--aaaaa 378
Query: 180 tgtctaaagtaaacaggtgtaatttatattgcaaagtacttgatttcatagttattttaa 239
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 379 tgtctaaagtaaacaggtgcaatttatattgcaaagtacttgatttgatagttattttaa 438
Query: 240 taatttatatacttataattttcagttcacctaaagtttgtaaccaattcaaaccattag 299
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 taatttatttactgataatttttagttcacctaaagtttgtaaccaattcaaaccattag 498
Query: 300 aaatttttctatattcatatgaaacccaagtaaataaaatttatagaaattgtgagaatt 359
|||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 499 aaatgtttctatattcatatgaaacccaagtaattaaaatttgtagaaattgtgagaatt 558
Query: 360 agatgtaattaacccaattcataaaactattcccacctccacattttgacaataaaattc 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 agatgtaattaacccaattcataaaactattcccacctccacgttttgacaataaaattc 618
Query: 420 atacaaactttcaattgtcacctttcctcttaaagcatgtataattgaagatactcctgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atacaaactttcaattgtcacctttcctcttaaagcatgtataattgaagatactcctgg 678
Query: 480 cctgacttcattagttgagttaaggtctaaggtaggagagaatatatgtgactttctctt 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cctgacttcattagttgagctaaggtctaaggtaggagagaatatatgtgactttctctt 738
Query: 540 acttatttaacattttgtttttcttatgatgtttcacataggtttaccttgagccccagc 599
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 739 acttgtttaacattttgtttttcttatgatgtttcacataggtttacattgagccccagc 798
Query: 600 actcttttgagtgaaaggcatctttacttggagtattttcaccattttaaatatccttgt 659
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 799 actctcttgagtgaaaggcatctttacttggagtattttcaccattttacatatccttgt 858
Query: 660 ctaaggacagactac 674
|||||||||||||||
Sbjct: 859 ctaaggacagactac 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space: 705832
Effective search space used: 705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
