TCCCGCTTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCAACAGATACTCTAAAAACTAGAAGGGCCTCAAC
AGATATCTTCCAAATTCTGTAAGACCAGAGAAGCCACCTCAGACCTAGCA
AAACTTTGAATCACCATAGATAAAGAAAACAAGATATTCCATTATGAAAC
ATTATTTTAAACATCATTCAGCCATACAGGGGATCCAAAAAAATTCCAAC
AAAAGGAACACCATAGAATGTATACACAAAAACAGTAATAATTTCAAACT
ATCAAAACCCAAATGAAACACACACACTCACTTACACACACACGCGCGCA
CACACACACACACACACACACACACACACACACACAGACAGACAGACACA
CACACACAGACAAACACACACTGGAACTAAATCATTTTTCGTTAATATTG
CTCAACATCAATAGACATTTTTCACCAATAACAAGACTAAAGCTATCAGA
GTGGATACATCAAGAGGATCTATCATTCTGTTGCGTACAAGAAACACTTC
TTAGCATCTAAGATATACACTACCTCTGAATAAAAAATTGGAAAAAGGAT
TTCATAGCGAATGGACCTTAGAATCACGCTTGAGTAGCCTTTGCCATATC
TAACTACATGGATCAAAAATTATCTTAAGGAGTTGGGAACGTTACCCCAC
AGGCTTCATAATGTAATATTACCTAGTTGG

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTTAAGGAGAAGACCTCAGT
ATGAACAAAGAACTTTCTTTTGCGGAGAAAGAGCATTGAGTGAGGCACAG
AGGTGGGAAAGCAAAGACTTTTCCAGAAATACATTGTCAGTCTTTTGTGA
ATAGAAGCCAGGGAGAGCATTACCTTACATTTCACACACACACACACACA
CACACACACACACACACACACACTCACAAACACAGACACACACACATGCA
CACCAACACATAAAACAGAGTTTAATTATTAGTACTATTACTGTTGTTAT
TATTATTAATTGACCAAAAAAATAGCACCTTTTGCATAGTGATGCAAACC
AGATGTTTTTAAGAGCAGTAGCCCAGATGCTTGGTCTTGCTTCTCCCACA
CACCCATGAACTATGTGCTGAGCAGCCTTCTCTAATACACTTGTTTATCC
AGCTTCCTGTCTGAGCTCCCAATGAGTGCTTCCAATGAGGAGCCACTCTC
TGCTGGGATTATATAAACAATGCCTAAACCATATTATGTAGCACATGCAA
ATGCACTATAAATGTTATAAAATTACTATTATCTCTATACTAAAGAAGAT
AGAAACTATTTAGATTCCCTTTCACTTTAGAGTGTTTTTTTTCTTTTCAT
CTTTGAGAGTTTTGAAATTGTATTGTTATGAATGTCATAGAGTTTATGAT
AACCAGCTAAT

Query= MSMg01no533_m15.g1 MSMg01no533_m15.g1 CHROMAT_FILE:
MSMg01no533_m15.g1 PHD_FILE: MSMg01no533_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:05 2005
         (644 letters)



>mm_chr1_148939349_148940395
          Length = 1047

 Score =  919 bits (475), Expect = 0.0
 Identities = 529/565 (93%), Gaps = 31/565 (5%)
 Strand = Plus / Minus

                                                                        
Query: 111  tcagtcttttgtgaatagaagccagggagagcattaccttacattt-------------- 156
            ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 1047 tcagtcttttgtgaatagaagccagggagagcattaccttacatttcacacacacacaca 988

                                                                        
Query: 157  cacacacacacacacacacacacacacacacacacacacactcacaaacacagacacaca 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  cacacacacacacacacacacacacacacacacacacacactcacaaacacagacacaca 928

                                                                        
Query: 217  cacatgcacac-------------c-aacacataaaacagagtttaattattagtactat 262
            |||||||||||             | ||||||||||||||||||||||||||||||||||
Sbjct: 927  cacatgcacacacacacatgcacacaaacacataaaacagagtttaattattagtactat 868

                                                                        
Query: 263  tactgttgttattattattaattgaccaaaaaaatagcaccttttgcatagtgatgcaaa 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  tactgttgttattattattaattgaccaaaaaaatagcaccttttgcatagtgatgcaaa 808

                                                                        
Query: 323  ccagatgtttttaagagcagtagcccagatgcttggtcttgcttctcccacacacccatg 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  ccagatgtttttaagagcagtagcccagatgcttggtcttgcttctcccacacacccatg 748

                                                                        
Query: 383  aactatgtgctgagcagccttctctaatacacttgtttatccagcttcctgtctgagctc 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  aactatgtgctgagcagccttctctaatacacttgtttatccagcttcctgtctgagctc 688

                                                                        
Query: 443  ccaatgagtgcttccaatgaggagccactctctgctgggattatataaacaatgcctaaa 502
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  ccaatgagtgcttccaatgtggagccactctctgctgggattatataaacaatgcctaaa 628

                                                                        
Query: 503  ccatattatgtagcacatgcaaatgcactataaatgttataaaattactattatctctat 562
            ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  ccatattatgtagtaaatgcaaatgcactataaatgttataaaattactattatctctat 568

                                                                        
Query: 563  actaaagaagatagaaactatttagattccctttcactttagagtgtttttttt---ctt 619
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||   |||
Sbjct: 567  actaaacaagatagaaactatttagattctctttcactttagagtgtttttttttttctt 508

                                     
Query: 620  ttcatctttgagagttttgaaattg 644
            |||||||||||||||||||||||||
Sbjct: 507  ttcatctttgagagttttgaaattg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1047
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1037
Effective search space:   657458
Effective search space used:   657458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)