CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGATATAGTTGATACATGAGGAAACAACCCGAATTTTAAAATG
TAAAACCTTTTTTTTTTTTTTTTTTTTTAGTTTGGCTGACATTTGGTGTC
AAAATAAAATAGTTCTGCTATGTCAACATGACAAAATACAGAAAATATCT
CAACAAAGTCAGTAGACACAGCTACAAAGCAGAGAAACACTAAAAAAGCC
ACACACCATCAGATATCATAAGAAATGTGAATGCAATAAACATTCTTTAA
AGAGATTATCTACTATGTTAGTGAGAGCAAGGAAATCTAACAGCATGGAG
ACGGGTGTGTCAACTCTTATAGAGAAATTCATGGGTGTTATTAATTCAGA
TCTTTTGAAGCACATTTTCTACAAAAACTTTTAAAAATACACTATTAAAT
ATTAAGCCCAAGTTTTTAGATGTTGGCATTGATTTTCAGACATCCTATAT
TAATCAAAGTACTAGTTCTTTCATACTTAAAAAAAAAGCTTTACTCATAG
TAATCATAGAAAATATTTGAAGACTTTTGGCCTAAAATACAGTAAGGGGC
ATTTTATTCTTAAAGAGATAATATATAAGAGAATAATAAACAACTGTAAA
AAGACAAATTTGTACTGGCTGGTTTTGTGTGTCAACTTGGCACAGCTGGA
GTTATCACAGAGAAAGGAGCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATTG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGTAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAA
AAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTT
ATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGCCAAC
TTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGAT
CTGATGGTGTTTTGG

Query= MSMg01no534_a06.b1 MSMg01no534_a06.b1 CHROMAT_FILE:
MSMg01no534_a06.b1 PHD_FILE: MSMg01no534_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:22 2005
         (676 letters)



>mm_chr1_83540471_83541547
          Length = 1077

 Score = 1270 bits (657), Expect = 0.0
 Identities = 669/673 (99%), Gaps = 2/673 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgatatagttgatacatgaggaaacaacccgaattttaaaatgtaaaacctt 64
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 206 gaattccatgacatagttgatacatgaggaaacaacccgaattttaaaatgtaaaacc-t 264

                                                                       
Query: 65  tttttttttttttttttttagtttggctgacatttggtgtcaaaataaaatagttctgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttttttttttttttttagtttggctgacatttggtgtcaaaataaaatagttctgct 324

                                                                       
Query: 125 atgtcaacatgacaaaatacagaaaatatctcaacaaagtcagtagacacagctacaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtcaacatgacaaaatacagaaaatatctcaacaaagtcagtagacacagctacaaag 384

                                                                       
Query: 185 cagagaaacactaaaaaagccacacaccatcagatatcataagaaatgtgaatgcaataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagagaaacactaaaaaagccacacaccatcagatatcataagaaatgtgaatgcaataa 444

                                                                       
Query: 245 acattctttaaagagattatctactatgttagtgagagcaaggaaatctaacagcatgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acattctttaaagagattatctactatgttagtgagagcaaggaaatctaacagcatgga 504

                                                                       
Query: 305 gacgggtgtgtcaactcttatagagaaattcatgggtgttattaattcagatcttttgaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacgggtgtgtcaactcttatagagaaattcatgggtgttattaattcagatcttttgaa 564

                                                                       
Query: 365 gcacattttctacaaaaacttttaaaaatacactattaaatattaagcccaagtttttag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcacattttctacaaaaacttttaaaaatacactattaaatattaagcccaagtttttag 624

                                                                       
Query: 425 atgttggcattgattttcagacatcctatattaatcaaagtactagttctttcatactta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgttggcattgattttcagacatcctatattaatcaaagtactagttctttcatactta 684

                                                                       
Query: 485 aaaaaaaa-gctttactcatagtaatcatagaaaatatttgaagacttttggcctaaaat 543
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaaaaaaagctttactcatagtaatcatagaaaatatttgaagacttttggcctaaaat 744

                                                                       
Query: 544 acagtaaggggcattttattcttaaagagataatatataagagaataataaacaactgta 603
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acagtaaggggcattttattcataaagagataatatataagagaataataaacaactgta 804

                                                                       
Query: 604 aaaagacaaatttgtactggctggttttgtgtgtcaacttggcacagctggagttatcac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaaagacaaatttgtactggctggttttgtgtgtcaacttggcacagctggagttatcac 864

                        
Query: 664 agagaaaggagct 676
           |||||||||||||
Sbjct: 865 agagaaaggagct 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1077
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1067
Effective search space:   710622
Effective search space used:   710622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)