BAC Information

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BAC

Clone NameMSMg01-534B16
Chromosome1 (Build37)
Map Location 133,109,561 - 133,110,165
singlet/doubletsinglet
Overlap geneRassf5
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn
Downstream geneIkbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534B16.T7 (MSMg01no534_b16.b1)MSMg01-534B16.TJ (MSMg01no534_b16.g1)
ACCAG601869AG601870
length768771
length of high quality
(start - end)		605 (51 - 655)605 (66 - 670)
definitionCHROMAT_FILE: MSMg01no534_b16.b1 PHD_FILE: MSMg01no534_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:29 2005CHROMAT_FILE: MSMg01no534_b16.g1 PHD_FILE: MSMg01no534_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATTTCGAGAGGAGCCGCGGAAATCTAACCATT
AACCCAGGACGGAGGGGGCAGGAGGCCCTGACAGGTCAGTGCAAGTTTAA
CTTTTATTTGCCTGATGTAATTTTCATCTTCCAGGCTTACTGACTGTCTG
CTACCTGAGGCCTCATCATGGAAGCTTCCAGCCTCTGTACAATCTAACCT
AGGCCTAGAACGTTTTCAGCCTCTGAGACTTGCTGCTGACTGAATATGCT
CACCCTTTCTAGCTTTCTGTACTCTAGCTGACTGGTTCAACTCAGCTGTT
CTGGCTCAAACTCCTCTACAAGCTGACTGATTCAAACTGGCTTCTCTCAG
CCTCTCCTGAATTGCTCTGCTTGACCTCATATTAACTTTAGCAATATGTT
CTAATCTACTGGCTCCTTCTCCTTCTCTGTCTTTATCTGGGTCTACATTA
TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCCCTCTCTCTCTCTCTCTGCATTCTGCCCCAGTAAAACCGCCTTCTCT
CTTCTCTCTGCACTGGTCTCTTAAGTAGCTTCCCTTTCCTCTCTCTTCTC
AGAATGATTGGGCATATCTTATCCTCTCAAATCGTTCTGATTCATCACTC
TGTCTGCCACTCAATTAGACATCACTTTCAAATATAGGTGCTTCCTTCTA
CAACCAACTTCACCTTCATGGGTTGTGAAAAAGGNGTATATTAAGGGTGT
GTGTGTATTCCAGCCACA

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCAGCTGAGTGGGAAGAAAACCAGCTGCCTCAGG
GCCCCAAGATAGAGTATGCTGCCTGGCAGCTTGCAGAAAAGGAGACCAAA
TGTGCCAAATTTGAAATTTGGTAGCTAGAAGGGATTCTCGGGGTGCCTGA
ACCATCATCAGCCAAGAATAACCTTCCTTCTTCCAGATCATCCGTGCAAG
CCCAGGCTTTGAGGTCCCTGCCCCCAAACCCACGTGCTCTGGTTTACCTC
AGGCCCCTGGCTTCACAGTCAGGAGAGCCAGTATGTGGAGAGCTTTGCCC
TGACTGAGCTGTGGCACCTTCAGGACAAGGGACCACAGCTGGCCCGGCAG
CCATCTGTGGGAACCCTGTCTTCTGCCAGCCCCACCCTCCTGTCCTTTTC
TCCTGCCTCTGGCTGAGTCTCTCTGCTTCCTGGCCCCTTGGACCGCCCTT
CCCTTTTGCCAAGGAGGCTCTAGAGGAAGGTCCTGGGAAACAGGAAACAG
CAGCGTATGCTCTGCCACTTGTGGTATGTGCCACTGCGGGCCTTCCTTTC
CATCTCTGAGGAAGTCCCTGGATGAAAGTCTAAAGGTTCTTTTCAATTCT
GGACATTAAGTCTCTACTTCCATGGATGAGAACACCACCTCTGGAAATTT
GTGCCTTTCCCCCAGTTTGGGGTATCGTCAGTGGACTATTTCAATGGGGT
TAAACGAAGCACCCTCACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_b16.g1 MSMg01no534_b16.g1 CHROMAT_FILE:
MSMg01no534_b16.g1 PHD_FILE: MSMg01no534_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:29 2005
         (605 letters)



>mm_chr1_133109361_133110365
          Length = 1005

 Score = 1108 bits (573), Expect = 0.0
 Identities = 597/605 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagctgagtgggaagaaaaccagctgcctcagggccccaagatagagtatgctgcctg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcagctgagtgagaagaaaaccagctgcctcagggccccaagatagagtatgctgcctg 746

                                                                       
Query: 61  gcagcttgcagaaaaggagaccaaatgtgccaaatttgaaatttggtagctagaagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 gcagcttgcagaaaaggagaccaaatgtgccaaatttgaaatttggtagatagaagggat 686

                                                                       
Query: 121 tctcggggtgcctgaaccatcatcagccaagaataaccttccttcttccagatcatccgt 180
           |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||
Sbjct: 685 tctcggggtgcctgaaccatcatcagccaagagtaaccctccttcttccagaccatccgt 626

                                                                       
Query: 181 gcaagcccaggctttgaggtccctgcccccaaacccacgtgctctggtttacctcaggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaagcccaggctttgaggtccctgcccccaaacccacgtgctctggtttacctcaggcc 566

                                                                       
Query: 241 cctggcttcacagtcaggagagccagtatgtggagagctttgccctgactgagctgtggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctggcttcacagtcaggagagccagtatgtggagagctttgccctgactgagctgtggc 506

                                                                       
Query: 301 accttcaggacaagggaccacagctggcccggcagccatctgtgggaaccctgtcttctg 360
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 505 accttcaggacaagggaccacagctggcccggcagccatctatgcgaaccctgtcttctg 446

                                                                       
Query: 361 ccagccccaccctcctgtccttttctcctgcctctggctgagtctctctgcttcctggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagccccaccctcctgtccttttctcctgcctctggctgagtctctctgcttcctggcc 386

                                                                       
Query: 421 ccttggaccgcccttcccttttgccaaggaggctctagaggaaggtcctgggaaacagga 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttggaccgcccttgccttttgccaaggaggctctagaggaaggtcctgggaaacagga 326

                                                                       
Query: 481 aacagcagcgtatgctctgccacttgtggtatgtgccactgcgggccttcctttccatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacagcagcgtatgctctgccacttgtggtatgtgccactgcgggccttcctttccatct 266

                                                                       
Query: 541 ctgaggaagtccctggatgaaagtctaaaggttcttttcaattctggacattaagtctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgaggaagtccctggatgaaagtctaaaggttcttttcaattctggacattaagtctct 206

                
Query: 601 acttc 605
           |||||
Sbjct: 205 acttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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