Query= MSMg01no534_b23.b1 MSMg01no534_b23.b1 CHROMAT_FILE:
MSMg01no534_b23.b1 PHD_FILE: MSMg01no534_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:30 2005
(592 letters)
>mm_chr1_168202951_168203942
Length = 992
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%), Gaps = 1/589 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgatctttcc-aaacttttatcatgaaggggtattggattttgtcaaatgctt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gaattcctgatctttccaaaacttttatcatgaaggggtattggattttgtcaaatgctt 778
Query: 64 tctcagcatctaacgagatgatcatgtggcttttgtctttgagtttgtttatatactgga 123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 777 tctcagcatctaacgagatgatcatgtgggttttgtctttgagtttgtttatatactgga 718
Query: 124 ttatgttgatggatttccgaatattaaaccatccctgcatccctgggatgaagcctactt 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttatgttgatggatttccaaatattaaaccatccctgcatccctgggatgaagcctactt 658
Query: 184 ggtcatgatggatgatcgttttgttgtgttcttggattcggtttgtggtcatgattctta 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggtcatgatggatgatcgttttgatgtgttcttggattcggtttgtggtcatgattctta 598
Query: 244 aacccaccatcttctgtcttcactttcttctgatttccagacttacatttgcaattgcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aacccaccatcttctgtcttcactttcttctgatttccagacttacatttgcaattgcca 538
Query: 304 gtgagcaatttgccatggacaattttgggtaacaccacttacattacttaacatgacgag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtgagcaatttgccatggacaattttgggtaacaccacttacattacttaacatgacgag 478
Query: 364 tttcaatctataaaaaatatcccaatgaaacacagtccctggagccctggtggtgtccca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttcaatctataaaaaatatcccaatgaaacacagtccctggagccctggtggtgtccca 418
Query: 424 cagacatcttaaattctacatgttcaaaacccaactcatccctctgcttctctaacctgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cagacatcttaaattctacatgttcaaaacccaactcatccctctgcttctctaacctgc 358
Query: 484 tttcccacccacatcccctttcttcgttaatgggatggctggttacccacctagttagaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttcccacccacatcccctttcttcgttaatgggatggctggttacccacctagttagaa 298
Query: 544 atcttcgcatcctgtttgacatatctccctcaaattcttctatacagct 592
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atcttcgcatcctgtttgacatatctccctcaaattcttctatacagct 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_b23.g1 MSMg01no534_b23.g1 CHROMAT_FILE:
MSMg01no534_b23.g1 PHD_FILE: MSMg01no534_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:31 2005
(564 letters)
>mm_chr1_168036019_168036984
Length = 966
Score = 1060 bits (548), Expect = 0.0
Identities = 561/566 (99%), Gaps = 2/566 (0%)
Strand = Plus / Plus
Query: 1 tagaggccgggcaggtgccctccataagtcaaaggcagggaactccctgctccagcgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaggccgggcaggtgccctccataagtcaaaggcagggaactccctgctccagcgcag 260
Query: 61 catcttcatcctacacagaccggttcaagctgtgatctaacatctgcaaagctccctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcttcatcctacacagaccggttcaagctgtgatctaacatctgcaaagctccctgcc 320
Query: 121 taccatggaattcatgctctcctttagcgatgacgaccacaaggcatccacagcccatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccatggaattcatgctctcctttagcgatgacgaccacaaggcatccacagcccatgc 380
Query: 181 cctgcttcccagccctttctgacaggagcctggcccctggttgcaggacacaaaggagca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcttcccagacctttctgacaggagcctggcccctggttgcaggacacaaaggagca 440
Query: 241 aagactccttgccacagacattgacacacgtatcccacatggataaaaagcctgcatctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagactccttgccacagacattgacacacgtatcccacatggataaaaagcctgcatctt 500
Query: 301 aaaaagtaagccaggtgagtagctcatgtgtgtaatcctggcatgtgagaggctgaggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaagtaagccaggtgagtagctcatgtgtgtaatcctggcatgtgagaggctgaggca 560
Query: 361 ggaggattgcctcaagctaaaggccagcctgggttacataatgagttataatacagacca 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggattgcctcaagctgaaggccagcctgggttacataatgagttataatacagacca 620
Query: 421 ggctacagagtaagatgttgtctctctaaaacaaaccaacaaaaatccctggattttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctacagagtaagatgttgtctctctaaaacaaaccaacaaaaatccctggattttttt 680
Query: 481 taaagcatcaaaaggaaaaaaaaaa--cctctttgtgtttgtgtatgtgtttgtgtatgt 538
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 taaagcatcaaaaggaaaaaaaaaaaacctctttgtgtttgtgtatgtgtttgtgtatgt 740
Query: 539 gtacgtgtttgtgtatgcgtttgtgt 564
|||| |||||||||||||||||||||
Sbjct: 741 gtacatgtttgtgtatgcgtttgtgt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space: 529624
Effective search space used: 529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
