Query= MSMg01no534_f16.b1 MSMg01no534_f16.b1 CHROMAT_FILE:
MSMg01no534_f16.b1 PHD_FILE: MSMg01no534_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:51 2005
(549 letters)
>mm_chr1_128389512_128390460
Length = 949
Score = 884 bits (457), Expect = 0.0
Identities = 466/471 (98%), Gaps = 4/471 (0%)
Strand = Plus / Minus
Query: 83 cagaaatgccagcagaaggcaaaaggtgggtgtctttgccagtttcacccagcccttcct 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 cagaaatgccagcagaaggcaaaaggtgggtgtctttgccagtttcacccagcccttcct 890
Query: 143 cgggtgcactcattgtttccaaatggacttggggacaacttctgactccagacacacacg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 cgggtgcactcattgtttccaaatggacttggggacaacttctgactccagacacacacg 830
Query: 203 gggctgtcagttccagctc----ttttttttttttttaatttttattagatattttcttt 258
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 829 gggctgtcagttccagctcttttttttttttttttttaatttttattagatattttcttt 770
Query: 259 atttacatttcctggtttcctctccgaaaaccccgtatcccctcccccttccccctgcag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atttacatttcctggtttcctctccgaaaaccccgtatcccctcccccttccccctgcag 710
Query: 319 tttcagctcttccttgcctgttaacaaatctttggatagctatggcagcctctgggtcag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttcagctcttccttgcctgttaacaaatctttggatagctatggcagcctctgggtcag 650
Query: 379 ctccatcataaggttaaggaacctgtttgtttagctcattagcaaaatttgttccactca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctccatcataaggttaaggaacctgtttgtttagctcattagcaaaatttgttccactca 590
Query: 439 ggcagggttaggggtaggggcatggagggagctaggggcctgttggatcactctctctcc 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggcagggttaggggtaggggcatggagggagctaggggcctgttggatcactctctctcc 530
Query: 499 ctccctctctcttctttcttccttccttccttccttccttccttccttcct 549
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 529 ctccctctctcttctttctttcttccttccttccttccttccttccttcct 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_f16.g1 MSMg01no534_f16.g1 CHROMAT_FILE:
MSMg01no534_f16.g1 PHD_FILE: MSMg01no534_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:51 2005
(627 letters)
>mm_chr1_128222460_128223487
Length = 1028
Score = 1118 bits (578), Expect = 0.0
Identities = 610/628 (97%), Gaps = 14/628 (2%)
Strand = Plus / Plus
Query: 1 ctacctgagggtcccacaggggtcatttcacataataataataataataataataataat 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ctacctgagggtcccac-ggggtcatttcacataataataataataataataataataat 272
Query: 61 aataataataataataataataataatatacagtgacctcagatagaaatggtttacctt 120
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 273 aataataataataata------------tacagtgacctcagatagaaatggtttacctt 320
Query: 121 cagctgttctcacgaaaaaagtttttcacacccttggcagcttgctgtttttctctcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctgttctcacgaaaaaagtttttcacacccttggcagcttgctgtttttctctcttt 380
Query: 181 acattagagagccagaggcccaggctaactcaggacagcagatatggaggacacttgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattagagagccagaggcccaggctaactcaggacagcagatatggaggacacttgaag 440
Query: 241 taagcaatctgagatgaggggatgtgtcctcactcccagagtacaactttaacaaacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagcaatctgagatgaggggatgtgtcctcactcccagagtacaactttaacaaacatg 500
Query: 301 aacaacacatgacaattcacaggtacattatgtattttatacacatagaatacatgccta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 aacaacacatgacaattcacaggtacattatgtattttatacacatagaatacacgccta 560
Query: 361 ttatttctataaaatatattttatagcatgtagagatcttattctaaaaaatgttacttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttctataaaatatattttatagcatgtagagatcttattctaaaaaatgttacttt 620
Query: 421 ttagaaattatatatccttcagcaggcacactttgctaatcttaataattcagtagttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagaaattatatatccttcagcaggcacactttgctaatcttaataattcagtagttca 680
Query: 481 tgaaaggtcactctagctaattataattccaagagagccaatcatatatccatcaattac 540
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 681 tgaaaggtcactctagctaattataattccaagagagtcaatcacatatccatcaattac 740
Query: 541 tgcaaggcaaactaatg-aatggatttcagcaggcaagagacaaaagatgatacaaaagg 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcaaggcaaactaatggaatggatttcagcaggcaagagacaaaagatgatacaaaagg 800
Query: 600 agtcaagaaagacaactaaatattcaat 627
|||||||||||||| |||||||||||||
Sbjct: 801 agtcaagaaagacatctaaatattcaat 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
