Query= MSMg01no534_j22.b1 MSMg01no534_j22.b1 CHROMAT_FILE:
MSMg01no534_j22.b1 PHD_FILE: MSMg01no534_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:11 2005
(625 letters)
>mm_chr1_177865860_177866884
Length = 1025
Score = 1065 bits (551), Expect = 0.0
Identities = 602/619 (97%)
Strand = Plus / Plus
Query: 7 ggaattcactctgtatcctaagctggccttgaactcacagagatctgcctgcgtctgcct 66
||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 207 ggaattcactctgtagcctaagctggccttgaactcacagagatccacctgcttctgcct 266
Query: 67 ccccagtgctaggattaaaggcatataccaccactgcccaacttctccttttatttttat 126
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 267 ccccagtgctaggattaaaggcatataccaccactgcccaacttctccctttatttttat 326
Query: 127 gttggttctggggattaaattcagtttgcctggttttctcaacaaatttggaaacatgat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 327 gttggttctggggattaaattcagtttgcctggttttctcaacaaatttggaaacgcgat 386
Query: 187 tttcccgtctcaactttccaagtgcggggattataggtatgtattcacaaatacacactg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttcccgtctcaactttccaagtgcggggattataggtatgtattcacaaatacacactg 446
Query: 247 ggatgattttgacatttttaattgaatacttttttactaataggacatacataccgaact 306
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 447 gggtgattttgacatttttaattgaatacttttttactaataggacatacatactgaact 506
Query: 307 actatcctgtacttactgagtgttcctgtctgtcacccacactcaggtctccatagtcac 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 actatcctgtacttactgagtgttcctgtctgtcacccacactcaggtctccatagtcac 566
Query: 367 tagcttgtctctggaccctgaatagcttcctccagcccggacctccatcgttcccacccg 426
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct: 567 tagcttgtctctggaccctgaatagcttcctccagcccagacctccatcattcccaccgg 626
Query: 427 tggctagaagcttgttaggaggtggcgctaagggacactccagtgtctgcccagtgtgga 486
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 627 tggctagaagcttgttaagaggtggcgctaagggacactccagtgtctgcccggtgtgga 686
Query: 487 aacagctaaagacggctctctcgaccttctatcagggctgcaagctccaaaggcaacaca 546
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 687 aacagctaaagacggctctctcgaccttctatcaggactgcaagctccaaaggcaacaca 746
Query: 547 ggcagcacatttcacccttgaatcccactcagcagtcagtgtggccctttacatgtagta 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 747 ggcagcacatttcacccttgaatcccactcagcagtcagtgtggccctttacatgcagta 806
Query: 607 cttgctccatgctttctgt 625
|||||| ||||||||||||
Sbjct: 807 cttgcttcatgctttctgt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_j22.g1 MSMg01no534_j22.g1 CHROMAT_FILE:
MSMg01no534_j22.g1 PHD_FILE: MSMg01no534_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:11 2005
(662 letters)
>mm_chr1_178020124_178021185
Length = 1062
Score = 812 bits (420), Expect = 0.0
Identities = 491/536 (91%), Gaps = 35/536 (6%)
Strand = Plus / Minus
Query: 1 caatatatccaacattgtattagacagttcggatatgaaaaatttaattcatgctctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 caatatatccaacattgtattagacagttcggatatgaaaaatttaattcatgctctcaa 477
Query: 61 acagcttttagaagttgtattttataaaagaattggattgtgccaggggaaacattagaa 120
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 476 acagctttcagaagtggtattttataaaagaattggattgtgccaggggaaacattagga 417
Query: 121 gtatgattctgaagaggaaaatacattcataggaagcactggtatattttcagtttcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtatgattctgaagaggaaaatacattcataggaagcactggtatattttcagtttcaag 357
Query: 181 attaatttagaacccatcaatggcatgtgctagatttttctgaagtacaaggaaaaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attaatttagaacccatcaatggcatgtgctagatttttctgaagtacaaggaaaaacag 297
Query: 241 catcaactttcaaaacacctcaggttcgagtttggaatatgtaaggggaatttggtagac 300
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 296 catcaactttcagaacacctcaggttcgagtatggaatatgtaaggggaatttggtagac 237
Query: 301 aaacagaaattgttaga-a-------------------atatatgtatatatatatccaa 340
||||||||||||||| | | |||||| |||||||||||||||
Sbjct: 236 aaacagaaattgttatatatatatatatatatatatatatatatatatatatatatccaa 177
Query: 341 aaaacttaaagatcactttccatgtttctctgaatgcaggtgataagatcaatagcttca 400
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aaaacttaaagattgctttccatgtttctctgaatgcaggtgataagatcaatagcttca 117
Query: 401 aatttaacaagttttatttgttttgttttgttttgttt---------------caaaatc 445
|||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 116 aatttagcaagttttatttgttttgttttgttttgttttgttttgttttgtttcaaaatc 57
Query: 446 ttttttaagaattgctcttgtggaaaacattcctgaaggccttaactactctgaag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ttttttaagaattgctcttgtggaaaacattcctgaaggccttaactactctgaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
