Query= MSMg01no534_k06.b1 MSMg01no534_k06.b1 CHROMAT_FILE:
MSMg01no534_k06.b1 PHD_FILE: MSMg01no534_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:13 2005
(236 letters)
>mm_chr1_183222923_183223561
Length = 639
Score = 379 bits (196), Expect = e-110
Identities = 222/232 (95%), Gaps = 3/232 (1%)
Strand = Plus / Plus
Query: 5 gaattcttccctcattaccagggtagagggcactatagggtacaggt---gggggtgggc 61
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 205 gaattcttcccacattaccagggtagagggcactatagggtacaggtggggggggggggc 264
Query: 62 agagaagggaggtcccttctcgatgcccacatcaacgggtatggactccgtactaaggaa 121
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 agagaagggaggtcccttcttgatgcccacatcaatgggtatggactccgtactaaggaa 324
Query: 122 agcatagtttacatagtcccttgaactgtgcattgaggcctcacggctgaaggcactata 181
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 325 agcatagtttacatagtcccttgaactgtgcagtgaggcctcacggctgaaggcacgata 384
Query: 182 ttctttttgatggcagactctgtcttcacggcacaggcatcaggagggctta 233
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctttctgatggcagactctgtcttcacggcacaggcatcaggagggctta 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 639
Length adjustment: 9
Effective length of query: 227
Effective length of database: 630
Effective search space: 143010
Effective search space used: 143010
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no534_k06.g1 MSMg01no534_k06.g1 CHROMAT_FILE:
MSMg01no534_k06.g1 PHD_FILE: MSMg01no534_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:13 2005
(589 letters)
>mm_chr1_183401248_183402236
Length = 989
Score = 980 bits (507), Expect = 0.0
Identities = 525/531 (98%)
Strand = Plus / Minus
Query: 59 tgagatgggaggagcctgagatgggaggagcctgagatgggaggagcctgagatgggagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tgagatgggaggagcctgagatgggaggagcctgagatgggaggagcctgagatgggagg 793
Query: 119 agtctgggtctctgcttgactggaaactcacacttaagttacagataagcctctactggg 178
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 792 agcctgggtctctgcttgactggaagctcacacttaagttacagataagcctctactggg 733
Query: 179 tttggggtttgcctggtaccgtgcttggcctccatggcctcaaggaaggctcatccaacc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tttggggtttgcctggtaccgtgcttggcctccatggcctcaaggaaggctcatccaacc 673
Query: 239 ctggatctatattctggtatctatgttgagactgaggagaccattcttacaccattgggt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctggatctatattctggtatctatgttgagactgaggagaccattcttacaccattgggt 613
Query: 299 atacgagagagatctgctgctcatagaagctcccaggaggataggaaagaccctcaggca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atacgagagagatctgctgctcatagaagctcccaggaggataggaaagaccctcaggca 553
Query: 359 ggcttaaagatagatcagaaggcaagatggtgctggagtctgcctttcttgtgcttagtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggcttaaagatagatcagaaggcaagatggtgctggagtctgcctttcttgtgcttagtg 493
Query: 419 ggtagagtcgggcacagatggattcccacaaacaaccagaagttctgttgtttgaacttc 478
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtagagccgggcacggatggattcccacaaacaaccagaagttctgttgtttgaacttc 433
Query: 479 tagatggtataggagaaaagagagagaaggtagcaagagtaatggggcttgaaagctgtc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tagatggtataggagaaaagagagagaaggtagcaagagtaatggggcttgaaagctgtc 373
Query: 539 aatcatcaaagtagagtcacattctcttactctaaagccaggatatccata 589
||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatcatcaaggtggagtcacattctcttactctaaagccaggatatccata 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
