Query= MSMg01no534_l01.b1 MSMg01no534_l01.b1 CHROMAT_FILE:
MSMg01no534_l01.b1 PHD_FILE: MSMg01no534_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:17 2005
(666 letters)
>mm_chr1_166870211_166871275
Length = 1065
Score = 1156 bits (598), Expect = 0.0
Identities = 647/666 (97%), Gaps = 6/666 (0%)
Strand = Plus / Plus
Query: 5 gaattcacggagactgagggggcatgcacagggcctgcgcaggtctgcatcatgtcttct 64
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 200 gaattcacggagactgaggaggcatgcacagggcctgtgcaggtctacatcatgtcttct 259
Query: 65 gcataatattatggcttctagcttagcatttctctggggttcctgaatgtgtgaattctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcataatattatggcttctagcttagcatttctctggggttcctgaatgtgtgaattctc 319
Query: 125 taatccttgtgcttttctcttgggttactttccttctgtttgtttgtcttgtcctagtcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taatccttgtgcttttctcttgggttactttccttctgtttgtttgtcttgtcctagtcc 379
Query: 185 aatgtgttagatttgttttaccttattttatt-----attatcccttcaaaaaaataaaa 239
||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 380 aatgtgttaaacttgttttaccttattttattttattattatcccttcaaaaaa-taaaa 438
Query: 240 tcaatttatatattctgacattatcatatgaaacttgggctttatgtttaagtataatag 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 tcaatttatatattctgacattatcatatgaaactcgggctttatgtttaagtataatag 498
Query: 300 tgtttaattcacacccctgctgtaatcagatataaaaggatctgattctctaatccttac 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 499 tgtttaattcacacccctgctgtaattagatataaaaggatctgattctctaatccttac 558
Query: 360 caatacaggatttcaataaatcgatttagtcattgcaaacaaatatgtaatagataatag 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 559 caatacaggatttcaataaatcgatttagtcactgcaaacaaatatgtaatagataatag 618
Query: 420 ataattcctcattgctggtcgatcttagctgtcccaactgtaaagttaataatcgtttgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ataattcctcattgctggtcgatcttagctgtcccaactgtaaagttaataatcgtttgt 678
Query: 480 gaatatcttatgaactcttttccttactgtttatccatttctctttatttctttaggtaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaatatcttatgaactcttttccttactgtttatccatttctctttatttctttaggtaa 738
Query: 540 gtgctttcatcacaactatgtttctattaaatttcaattgacagcatgctaggaatttat 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 739 gtgctttcatcacaactatgtttctattaaatttcaattgacagtatgctaggaattcat 798
Query: 600 aaagagttaaagtcctatgcatataccctgattgcagtgggaaactcatacattgccaac 659
||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 799 aaaaagttaaggtcctatgcatataccctgtttgcagtgggaaactcatacattgccaac 858
Query: 660 aaaatt 665
||||||
Sbjct: 859 aaaatt 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_l01.g1 MSMg01no534_l01.g1 CHROMAT_FILE:
MSMg01no534_l01.g1 PHD_FILE: MSMg01no534_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:17 2005
(653 letters)
>mm_chr1_167036659_167037710
Length = 1052
Score = 339 bits (175), Expect = 6e-97
Identities = 196/203 (96%), Gaps = 1/203 (0%)
Strand = Plus / Minus
Query: 1 caagaggcaggggctaaaaagtattgggcccagtacaggacaacctgggaggagagccca 60
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 402 caagaggcaggggctaaaaagtatt-ggcccagtacaggagaacctgggaggagagccca 344
Query: 61 catgtcaactagataccaaccatgtagctcagccatgaagggaagcgaggaggaggctgg 120
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 343 catgtcaactagacaccaaccatgtaactcagccatgaagggaagcgaggaggaggctgg 284
Query: 121 ccctgagttaatttctttgttaggccataagtctggttgctctctggctgcctctggtct 180
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 283 ccctgagttaatttctttgtcaggccgtaagtctggttgctctctggctgcctccggtct 224
Query: 181 gacatacacagctcatctttctt 203
|||||||||||||||||||||||
Sbjct: 223 gacatacacagctcatctttctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
