BAC Information

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BAC

Clone NameMSMg01-534N08
Chromosome1 (Build37)
Map Location 170,717,020 - 170,791,909
singlet/doubletdoublet
Overlap genenone
Upstream geneLmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534N08.T7 (MSMg01no534_n08.b1)MSMg01-534N08.TJ (MSMg01no534_n08.g1)
ACCAG602426AG602427
length749765
length of high quality
(start - end)		596 (43 - 638)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no534_n08.b1 PHD_FILE: MSMg01no534_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:28 2005CHROMAT_FILE: MSMg01no534_n08.g1 PHD_FILE: MSMg01no534_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,791,318 - 170,791,909)(170,717,020 - 170,717,260)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCCTTTGAGATTCCTGAGATGCTCTGAGAACAGTTTTATTTCTTTCT
CTGCTTTGTTACTTTAAACAGGTCTGAACAAGAAGAATTTGCCTTTGAGA
CATGAGATGCAATTTTCACCAGATTCAGAAACCACAACCTTGCCTTTGTA
TCTTGCAGAAAAAATTTAAAGATCTGTATATTTATCACAAAAGAGTCATT
CACAAGAATGCTATCACTGAAGGAATATTGGTGGATTCAGGTGCAGTACT
GATGACTAGCAAGAGACAGAGGATTAAATGGAATAATATGAAACATTTCT
AAGTAGATGTAGACATCTCTACTTATATTTTTTGCTAAGATGAAGTATAA
ATGTAGCTGAAAAAAATGAATGTGTTCTTTTAAAAAACTTTTTGAGTTTT
GGGGACTGTCTGTATCTTGGGTATTCTGTACATTTTTTTTGGCTAATATC
CACTTACTAGTGAGTACATACCCTGCATGTCCTATTGGGTCTGAGTTATC
TCACTCAGGAAGATGTTTTCTAGTTCCATCTATTTGCCTACAAAATTCAA
GATGTCCTCATTCTTAATAGCTAAGTAGTATTCCATTGTGTAAATGAACC
ACATTTTCTGTATCCATTCTTCTGTCATGGGACATCTAGGTTGTTTCCAG
CTTCTGGCTATCACAAAAAAAGCTGCTATGAACATAGTGTGNCATGTGN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATTCAACTTCAAACTGACAAACTGTTT
TTAATCTTTTCCTTCCATCCAGCCTGGAGATTGGGAAGCAAAAATCAATA
CCAGTTGGCAGGTGATCAAGCTGCCTCAGACTGGTGTGAGAAGAACACAG
AGTCTGAGTGCAAGAGGACAGGGGGAGGGATGGAAGGGGGGCAGGCTGGG
GTGGGGGTGGGGGGCTGCTGAATGGAAAGGAGTTTGACTAAGTACCATGA
ATTACTGGCTGGTTTTTCAAAGGGCCCCGTGATTTCTATGGCCTTGAGCA
GGGGACCTTGGGAATGCCATTAGAACAATTAGGTCCTGAGCACACAGATG
TTGAGGTGCCCCCACAGAAAGAAGAGAAGGAAGGGTTTTCCTCGATCTTG
ATTGGAATATAGGAAGGGAATAATGAAGTCGGTATGAATAGTTGCATGAG
GACTCATTCTTTCTGTCGCATCCTTCATGTTCAGGTTTGACATACCCATC
ACACCACAAGGTTGATGTCTCCTTTTAAAGACAAGTACAAACCATTGTTC
CTACCTTATTTTTCCTCACTTTGTCTAATACTTCTCTGGGATTGCGTTTA
TAGGCGTAGACTGTTAACCGAATACCTTTTTTAGTAAGCCCTCCTGATCC
ATTCCTTTGATCCCTTTTGCATTTACCATCCCCGGTTCCTCTTCACTTGT
CCTGTTCCTTGCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_n08.b1 MSMg01no534_n08.b1 CHROMAT_FILE:
MSMg01no534_n08.b1 PHD_FILE: MSMg01no534_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:28 2005
         (596 letters)



>mm_chr1_170791315_170792310
          Length = 996

 Score = 1145 bits (592), Expect = 0.0
 Identities = 592/592 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcctttgagattcctgagatgctctgagaacagttttatttctttctctgctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaattcagcctttgagattcctgagatgctctgagaacagttttatttctttctctgctt 536

                                                                       
Query: 65  tgttactttaaacaggtctgaacaagaagaatttgcctttgagacatgagatgcaatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgttactttaaacaggtctgaacaagaagaatttgcctttgagacatgagatgcaatttt 476

                                                                       
Query: 125 caccagattcagaaaccacaaccttgcctttgtatcttgcagaaaaaatttaaagatctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 caccagattcagaaaccacaaccttgcctttgtatcttgcagaaaaaatttaaagatctg 416

                                                                       
Query: 185 tatatttatcacaaaagagtcattcacaagaatgctatcactgaaggaatattggtggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tatatttatcacaaaagagtcattcacaagaatgctatcactgaaggaatattggtggat 356

                                                                       
Query: 245 tcaggtgcagtactgatgactagcaagagacagaggattaaatggaataatatgaaacat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcaggtgcagtactgatgactagcaagagacagaggattaaatggaataatatgaaacat 296

                                                                       
Query: 305 ttctaagtagatgtagacatctctacttatattttttgctaagatgaagtataaatgtag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttctaagtagatgtagacatctctacttatattttttgctaagatgaagtataaatgtag 236

                                                                       
Query: 365 ctgaaaaaaatgaatgtgttcttttaaaaaactttttgagttttggggactgtctgtatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctgaaaaaaatgaatgtgttcttttaaaaaactttttgagttttggggactgtctgtatc 176

                                                                       
Query: 425 ttgggtattctgtacattttttttggctaatatccacttactagtgagtacataccctgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttgggtattctgtacattttttttggctaatatccacttactagtgagtacataccctgc 116

                                                                       
Query: 485 atgtcctattgggtctgagttatctcactcaggaagatgttttctagttccatctatttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 atgtcctattgggtctgagttatctcactcaggaagatgttttctagttccatctatttg 56

                                                               
Query: 545 cctacaaaattcaagatgtcctcattcttaatagctaagtagtattccattg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  cctacaaaattcaagatgtcctcattcttaatagctaagtagtattccattg 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_n08.g1 MSMg01no534_n08.g1 CHROMAT_FILE:
MSMg01no534_n08.g1 PHD_FILE: MSMg01no534_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:28 2005
         (244 letters)



>mm_chr1_170716820_170717463
          Length = 644

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcaacttcaaactgacaaactgtttttaatcttttccttccatccagcctggagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcaacttcaaactgacaaactgtttttaatcttttccttccatccagcctggagat 260

                                                                       
Query: 61  tgggaagcaaaaatcaataccagttggcaggtgatcaagctgcctcagactggtgtgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaagcaaaaatcaataccagttggcaggtgatcaagctgcctcagactggtgtgaga 320

                                                                       
Query: 121 agaacacagagtctgagtgcaagaggacagggggagggatggaaggggggcaggctgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacacagagtctgagtgcaagaggacagggggagggatggaaggggggcaggctgggg 380

                                                                       
Query: 181 tgggggtggggggctgctgaatggaaaggagtttgactaagtaccatgaattactggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggggtggggggctgctgaatggaaaggagtttgactaagtaccatgaattactggctg 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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