BAC Information

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BAC

Clone NameMSMg01-534O12
Chromosome1 (Build37)
Map Location 171,985,283 - 171,985,674
singlet/doubletsinglet
Overlap geneDdr2
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7
Downstream geneLOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534O12.T7 (MSMg01no534_o12.b1)MSMg01-534O12.TJ (MSMg01no534_o12.g1)
ACCAG602482AG602483
length739740
length of high quality
(start - end)
700 (40 - 739)392 (235 - 626)
definitionCHROMAT_FILE: MSMg01no534_o12.b1 PHD_FILE: MSMg01no534_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:34 2005CHROMAT_FILE: MSMg01no534_o12.g1 PHD_FILE: MSMg01no534_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATCTT
CTGGGAAGTGTTTTCTGGGAACACAAAGAAGCTATGTTCCAGAGATAGCC
AAGGTTGTACCTCTTGCTGCAGCTGGACTTGGTAATATGTAAGAGTCACC
CAGGTGGTACTGGTTTTGAAGGCATGAAGATGTAATGAAGAACAGCTGAG
GCTTGGCACTGTGAGAGGTCATGGAAGGCCATTGGAGAAGGTGTAGCCTC
AGCTGTAGTTGATGGCCCAGGACTGAAGGGGTCATGCAAAGGAGGCTATT
GGTGAAGCCTAGTTGGAGTGGAATACCCCAGTGTATTGGAGATGTCAGTA
CCATGGAGTGATCACCAAGAGCTGCAGCTGTAGTGGAGTGGATCAACCTG
AGCTTAGAGTGCTACAGAGGGCAGAGCTGGAGAAGTGATGCCAGCCCTTA
GGAGGAGTCTAAAAGATGAAGTGGAATCCCAGACACTGAAACAAGAAGCT
GTAACATTGAAATTGCCTTGGAGACTCAGAGATGTTAAAGATGCCAGAGC
CATGGGATACATGCTGAGGAAAGCTGCTAACAGGGAGTGGAAACAGCCCA
GGAGAAAGCAGTTTGTTGCAGTCAACAAAGATGAAAAAGGAGTGGAGATC
TGAAGATCGCTTTGACATCAGCCATGGAGATGCAGAGTTTGGAGTTTGCC
CAGCTGGTTTCCTGCCTTGCTTTGGGGATTACAGTTAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCTTACTATCCCAGCTGCGTTAGTCTGAACC
ACCTGGATGTGGTTCACCACATAGGCGAGTCACTGTCCCTTGGAAAAACT
TTCTATCTGTTCATCTGTCCTCTGAAAGCAAACACTGGCTGAAGGTTCAG
GACCAGCTTTTACAGGCTCCTAAGTAATGATTCTTATATATTCAGAGATT
CTGGCAGACAGCAGACATCATGACAGTAGTTCAAATCACCATGATTAGAG
TACGCACACAGGAGATTTGCCGAAAGCTACACACCAGGGCTGAGTACCTC
TTCTGTAGGATCCATTCTTTAACCATTGCCAGCATAACCCCAGTTATGAG
CATCACCCATCTCTTGATGCTTATCACAAAACATGTACCTATGTCAGTGT
TTGTTGAGAAAATTCATAGAGAGACTCTCTTGTGTACTGTTTGGAAGCAT
CACCAATAAAAAGCTGATGGCCTCTTAGCAAAAGGCAGGAAATAGAGGAT
GGAACTCTTTTGGTATTCTGCACGCTAGAGAGAGGTGGGAGGATTCGCCC
AGAACTCTGAGGAAGTCAGATGCATGAAACTGAGAAGAGGTAACGGGCAA
TGTGGCAGACATAGACTATAATAAATGAGTTACGTACGTTACATGCTAGT
GGGGGCTGGGGGGGCAGAGCCTAAGCTTAAGGTCATAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_o12.g1 MSMg01no534_o12.g1 CHROMAT_FILE:
MSMg01no534_o12.g1 PHD_FILE: MSMg01no534_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:34 2005
         (392 letters)



>mm_chr1_171985083_171985874
          Length = 792

 Score =  758 bits (392), Expect = 0.0
 Identities = 392/392 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatattcagagattctggcagacagcagacatcatgacagtagttcaaatcaccatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatattcagagattctggcagacagcagacatcatgacagtagttcaaatcaccatga 260

                                                                       
Query: 61  ttagagtacgcacacaggagatttgccgaaagctacacaccagggctgagtacctcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagagtacgcacacaggagatttgccgaaagctacacaccagggctgagtacctcttct 320

                                                                       
Query: 121 gtaggatccattctttaaccattgccagcataaccccagttatgagcatcacccatctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggatccattctttaaccattgccagcataaccccagttatgagcatcacccatctct 380

                                                                       
Query: 181 tgatgcttatcacaaaacatgtacctatgtcagtgtttgttgagaaaattcatagagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgcttatcacaaaacatgtacctatgtcagtgtttgttgagaaaattcatagagaga 440

                                                                       
Query: 241 ctctcttgtgtactgtttggaagcatcaccaataaaaagctgatggcctcttagcaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcttgtgtactgtttggaagcatcaccaataaaaagctgatggcctcttagcaaaag 500

                                                                       
Query: 301 gcaggaaatagaggatggaactcttttggtattctgcacgctagagagaggtgggaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggaaatagaggatggaactcttttggtattctgcacgctagagagaggtgggaggat 560

                                           
Query: 361 tcgcccagaactctgaggaagtcagatgcatg 392
           ||||||||||||||||||||||||||||||||
Sbjct: 561 tcgcccagaactctgaggaagtcagatgcatg 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)