NTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCTAGAGAATGTTAACTAACTTAGAGAAAAGGAGCTGCCTCTTTTGC
CAGCTCGACACTCCAAGTTTGAGACATGAATTCATGAAAGCTAGACAGAC
ATTCTGGATTTCTTGAGGAAAAGCAAAGTCTTCTCACAAAATGAAGTTCA
CTTTCAACACTCCATCTGTAAGAACATATAGAGCTTGTTGCGTTTGTGGG
AATGGTAAAAGAAAGTGTCAAACCAATTATCATGTAGTGAAACATTTTCT
TTCTTCAAATATTATTGCAAAAAATTTTTTTTTTCACTTCTGACATAGAA
AATGTATTGAAGTTAAAACTCTATTGGCTACTAGAGAGGTATATACCTCT
ACATATGGCCCCAAGTGTCCTACCAGTGGCAACTGCATAAGATAAAAGAA
TATGCTTTTGTTTTTGGTGGTGAAATCAGTGATGGCATGTCACTACCCTC
TTACAAAAGAATTAATATTCACTGTTACTGCCTGCAAAACTGCAAACATG
CTCTTATGACTCAAAGTTTTAGGACTACAAAATTCTTTTTAAAACAATTT
AAAATGCAAAATGGAAAAATAAGGGTTTTGTTGTAGTTGTTGTTCACAAC
GAATATTTTGCACAAAAGTGATTCGCGTTTTTGATGTCAGAGTTGAAAAC
TGCAGTAAGGCCCAGTTATTTTAATAAGCACAAGTTAAAGTTGTGGAAAC
AAACATTTTGTAAATAT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGCGTACAAGGCTT
GTTTACTAGTTAGGCACAGCGGAGGCCCGCGCCATCTTATAATGGCGATT
GCTCGCGGCACACACAGCTCGCCTCAGAGATTACTGGCGGCACACATGCG
ATTGCTCGCAGCACGTACCGGCTTTCCACACTTTTGATCCCAGGGATAAT
TTCTTGATATTAGGTAAGCAATGGAATGGTTATGTGAATTATACTGAATA
TTTTTACTAATTTAAGAAATATGATAATTTTGAGAACATTAAATATTTTA
ACCCATGGATACAGGAAACCTGTCTGTTTATGTCTTCTTTAATGATTTTC
ATCAAGCCTTACAGTATTATTATTGATAGCTTTCAACTATGTGTTTAAAT
TCATTCCTAGGTATCCCATATTTTTGGTCATTGAAAGTAGGTTTATTTTA
TGTTTTATTTCAAAGACTTGATTATAACCACATATAAACAAGCTAAATTT
TATATGTAGATTTATATTTTACAACACTGCTATTTCATTATTTCTAATAC
CTTTGGGTGGCATTTTAATTTTCTGTTTTGGATCATTTTCATACACAAGG
TTTCATGTCACCCAGGGTGGCTTTGAATGTACTGTATAGCTGAGTATGAA
TTCTGTCCACAGCAAAGGTCACAGATGTTTGCCAGCATACCAGGGAAGAT
TATATATATATATATAT

Query= MSMg01no535_a01.b1 MSMg01no535_a01.b1 CHROMAT_FILE:
MSMg01no535_a01.b1 PHD_FILE: MSMg01no535_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:41 2005
         (700 letters)



>mm_chr1_27943853_27944951
          Length = 1099

 Score = 1305 bits (675), Expect = 0.0
 Identities = 690/695 (99%), Gaps = 1/695 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctagagaatgttaactaacttagagaaaaggagctgcctcttttgccagctcgac 65
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctagagaatgtgaagtaacttagagaaaaggagctgcctcttttgccagctcgac 265

                                                                       
Query: 66  actccaagtttgagacatgaattcatgaaagctagacagacattctggatttcttgagga 125
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 266 actccaagtttgagacatgaattcatggaagctagacagacattctggatttcttgagga 325

                                                                       
Query: 126 aaagcaaagtcttctcacaaaatgaagttcactttcaacactccatctgtaagaacatat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaagcaaagtcttctcacaaaatgaagttcactttcaacactccatctgtaagaacatat 385

                                                                       
Query: 186 agagcttgttgcgtttgtgggaatggtaaaagaaagtgtcaaaccaattatcatgtagtg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agagcttgttgcgtttgtgggaatggtaaaagaaagtgtcaaaccaattatcatgtagtg 445

                                                                       
Query: 246 aaacattttctttcttcaaatattattgcaaaaaattttttttttcacttctgacataga 305
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 446 aaacattttctttcttcaaatattattgcaaaaa-ttttttttttcacttctgacataga 504

                                                                       
Query: 306 aaatgtattgaagttaaaactctattggctactagagaggtatatacctctacatatggc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgtattgaagttaaaactctattggctactagagaggtatatacctctacatatggc 564

                                                                       
Query: 366 cccaagtgtcctaccagtggcaactgcataagataaaagaatatgcttttgtttttggtg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccaagtgtcctaccagtggcaactgcataagataaaagaatatgcttttgtttttggtg 624

                                                                       
Query: 426 gtgaaatcagtgatggcatgtcactaccctcttacaaaagaattaatattcactgttact 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgaaatcagtgatggcatgtcactaccctcttacaaaagaattaatattcactgttact 684

                                                                       
Query: 486 gcctgcaaaactgcaaacatgctcttatgactcaaagttttaggactacaaaattctttt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcctgcaaaactgcaaacatgctcttatgactcaaagttttaggactacaaaattctttt 744

                                                                       
Query: 546 taaaacaatttaaaatgcaaaatggaaaaataagggttttgttgtagttgttgttcacaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaaacaatttaaaatgcaaaatggaaaaataagggttttgttgtagttgttgttcacaa 804

                                                                       
Query: 606 cgaatattttgcacaaaagtgattcgcgtttttgatgtcagagttgaaaactgcagtaag 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 805 cgaatattttgcacaaaagtgattcgcgtttttgatgtcagagttgaaaactgaagtaag 864

                                              
Query: 666 gcccagttattttaataagcacaagttaaagttgt 700
           |||||||||||||||||||||||||||||||||||
Sbjct: 865 gcccagttattttaataagcacaagttaaagttgt 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1099
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1089
Effective search space:   751410
Effective search space used:   751410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)