Query= MSMg01no535_a17.b1 MSMg01no535_a17.b1 CHROMAT_FILE:
MSMg01no535_a17.b1 PHD_FILE: MSMg01no535_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:45 2005
(722 letters)
>mm_chr1_112599416_112600537
Length = 1122
Score = 1274 bits (659), Expect = 0.0
Identities = 701/719 (97%), Gaps = 8/719 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcatctaaaggcagtttgttggtaatttttttcttcactggcatttacaaagc 64
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcacctgaaggcagtttgttggtaatttttttcttcactggcatttacaaagc 264
Query: 65 aaggaaatatagaaaattgtgattattctaaaagagatatatcaagggagagtcgatctt 124
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 aaggaaatatagaaaagtgtgattatgctaaaagagatatatcaagggagagtcgatctt 324
Query: 125 ttttattttatcttgacatcaactgttttccttttcttattcaagatttatacacagtaa 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttatcttatcttgacatcaactgttttccttttcttattcaagatttatacacagtaa 384
Query: 185 aataacataatatttgctgataatattttgccattgaaaataatgtaacccaattcagaa 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 aataacataatatttgctgat-------tgccattgaaaataatgtaacccaattcagaa 437
Query: 245 aattatttttcctcatatttattggacaagacatctcatttgaggaaggctatgtttcca 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 438 aattatttttcctcatatttattgaacaagacatctcatttgaggaaggctatgtttcca 497
Query: 305 tttaccattcttttagaggatctgacataagattaagaaaaattaggaaggattaggaag 364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttaccattcttgtagaggatctgacataagattaagaaaaattaggaaggattaggaag 557
Query: 365 catcttatacatcattcattataggagcacactagaaaatgctcaggagatactgcagct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 catcttatacatcattcattataggagcacactagaaaatgctcaggagatactgcagct 617
Query: 425 gatgatgatagggacttatgtatttaaggctcaattaatttggccacaggatatgagcga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 618 gatgatgatagggacttatgtatttaaggctcaattaatttggccacaggatatgagaga 677
Query: 485 taatacatgaataatgtgaggaggagagagttctgcttttagaaagatataaacaccaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taatacatgaataatgtgaggaggagagagttctgcttttagaaagatataaacaccaca 737
Query: 545 cagtaaccattttcataagcataaagtgttcaattgcattagatatctattttctgcatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagtaaccattttcataagcataaagtgttcaattgcattagatatctattttctgcatt 797
Query: 605 agtatcatgattatttaaaaatt-catcaaatatgagacagacatcagtaaagcacatat 663
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 798 agtatcatgattatttaaacatttcatcaaatatgagacagacatcagtaaagcacatat 857
Query: 664 cgactcttttctgaaactaaaagaaatatgtattggggttttgattcaatgtcctttta 722
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 858 cgactcttttctgaaactaacagaaatatgtattggggttttgattcaatgtcctttta 916
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space: 791744
Effective search space used: 791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_a17.g1 MSMg01no535_a17.g1 CHROMAT_FILE:
MSMg01no535_a17.g1 PHD_FILE: MSMg01no535_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:45 2005
(648 letters)
>mm_chr1_112719805_112720852
Length = 1048
Score = 1158 bits (599), Expect = 0.0
Identities = 636/651 (97%), Gaps = 7/651 (1%)
Strand = Plus / Minus
Query: 1 tctaggtatgtaaggttgaacaaacttgcaacagtgctttctacccctgtcttccaaact 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctaggtatgtaagattgaacaaacttgcaacagtgctttctacccctgtcttccaaact 675
Query: 61 ataaacatatattgcaggcacaactgtaaacctatttctgttctgaaaagaacatgaaca 120
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 674 ataaacatagattgcaggcagaagtgtaaacctatttctgttctgaaaagaacatgaaca 615
Query: 121 atctcacagagaaacaagctggagaccatttatattttaatttttaatattttttagcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atctcacagagaaacaagctggagaccatttatattttaatttttaatattttttagcac 555
Query: 181 agatcagcctcatgcatgtatatttacatttttacatttgtatactttttctgattttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agatcagcctcatgcatgtatatttacatttttacatttgtatactttttctgattttgt 495
Query: 241 gttttcagtaatggtggtttcatttcttttctttctctggtcttttggttgtggttggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gttttcagtaatggtggtttcatttcttttctttctctggtcttttggttgtggttggcc 435
Query: 301 ttctcttcaatcataagtatttcttctatttgctattgactgttttaatggacatatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttctcttcaatcataagtatttcttctatttgctattgactgttttaatggacatatata 375
Query: 361 agtcacaaaactctttttttcttaaactatggcagataatcttgctggttacaatagttt 420
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 374 agtcacaaaactcttttcttcttaaactatggccgataatcttgctggttacaatagttt 315
Query: 421 agcttggtatttatggtcgtttagtattagtagtacattgctgaagacacttttgttttc 480
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 314 agcttggtatttatggtcgtttagtattagtagtacattgctgcagacagttttgttttc 255
Query: 481 taaagtctccattgggaaaccagatgttattcttatacattttttttatcatatgtgatt 540
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 taaagtctccattgggaaaccagatgttattcttatac--tttttttatcatatgtgatt 197
Query: 541 tatgttttttttt---atatttcttccaaaatgctacttttatctatatattcacggttc 597
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tatgttttttttttctatat--cttccaaaatgctacttttatctatatattcacggttc 139
Query: 598 attgagactatacatagggagtatctcttctgttcctatgaatttggagtt 648
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 attgagactatacatagggagtatctcttctgttcctatgaatttggagtt 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
