CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACATGAAACCAGAGACACTGTAACTTATTGAGGAGAAAGTAGGAA
AAACCCTCAAAGATATGGGCACAGGGAAAAAAATTCCTGAATAGAACAGC
AATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGTACCTCATGAAAC
TGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGGCTA
CCAAAAGATTAGGAAAAGATCTTTACTTATCCTAAATCAGATAGGGGACT
AATATCCAATATATATTAAGAACTCAAGAAGGTGGATTCCAAAAAATCAA
AAAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAATTTTCAACC
TGCAGAATTCCAAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATGATCACAGAAATGCAAATCAAAACAATCCTGAGATTCCTCCTCACA
CCAGTCAGAATGGCTGATCAAAAATTCAGGTAACAGCAGATGCTGGCAAG
GATGTGGAGAAAGAGAAACACTCACTCCTCCATTGTTGGTGGGATTGCAA
GCTTGTACAACCTCTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCAGAGGATCCTGCAATACCTCTCCTGGGCATATATCCA
GATGTTCCAACCGGTAAGGACACATGCTCCACTATGTTCATAGAAGCCTT
ATTTATAATAGCCAGAAGCAGGAAAGN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAATGTTAAGGTCATCAAAAGGGAAAAG
GGCTGGGGAAGTTTGATAAATCGGCACACTGTAGTGGAGAAGATATATAT
AATCTTACCTGCATAATGAGATTCAGGAACAAAATATTCAATGTTTATCA
GGTTAAAAACTATTTAGCTGCTATTAACATGTTGATGTTAGCTTGTGGAT
TCTGAAAAGGCATGTTTGTAATATGAGTTTTTAATAACAGAGAGCCATGT
GTGGGAGAGAAAGTCTCCAAAGAAAAAAGTACTATCCAGGTATAGGTTTG
CAAATCTAAAATTTCTAAATAAAAATTACTGTTAAAAACAACAACAACAA
CAACAACAACAACAACAAAAGCAAAAAAAAACCAAAAAAAAAAAAAAACC
CAAACAGACCCAGAATCTCTGGGACCATAAAATAGCTGAGAGGGTAAAAA
TTCTGGGCAGTAAACCTCCCTTCCTGATCTTGGTCTCTATAATTTGCATG
GTAACAGAAAGAACTCTTTCCTGCAGATTGTCCTCTGATCTCTGCACACA
TGTGGATACACATGCAGATCTCTAGGCAAATACATACATACATACATACA
TGCATACATACACATGTGCATACATACGCATTTTATACTTACTCATATAC
ATATTTTGAATGAAGAAGTATATGATCCCATTACATTGCTGATAGAAGCA
GCAGGGAGGCAAGTTTAAAGCCAG

Query= MSMg01no535_c02.g1 MSMg01no535_c02.g1 CHROMAT_FILE:
MSMg01no535_c02.g1 PHD_FILE: MSMg01no535_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:51 2005
         (566 letters)



>mm_chr1_49483736_49484701
          Length = 966

 Score =  934 bits (483), Expect = 0.0
 Identities = 512/527 (97%), Gaps = 11/527 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaatgttaaggtcatcaaaagggaaaagggctggggaagtttgataaatcggcacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cagaatgttaaggtcatcaaaagggaaaagggctggggaagtttgataaatcggcacact 457

                                                                       
Query: 61  gtagtggagaagatatatataatcttacctgcataatgagattcaggaacaaaatattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtagtggagaagatatatataatcttacctgcataatgagattcaggaacaaaatattca 397

                                                                       
Query: 121 atgtttatcaggttaaaaactatttagctgctattaacatgttgatgttagcttgtggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgtttatcaggttaaaaactatttagctgctattaacatgttgatgttagcttgtggat 337

                                                                       
Query: 181 tctgaaaaggcatgtttgtaatatgagtttttaataacagagagccatgtgtgggagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tctgaaaaggcatgtttgtaatatgagtttttaataacagagagccatgtgtgggagaga 277

                                                                       
Query: 241 aagtctccaaagaaaaaagtactatccaggtataggtttgcaaatctaaaatttctaaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 276 aagtctccaaagaaaaaagtactatccaggtataggtttgcaaatctaaaatttctaagt 217

                                                                       
Query: 301 aaaaattactgttaaaaacaacaacaacaacaacaacaacaacaacaaaagcaaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||| ||||| |||  |||||||||
Sbjct: 216 aaaaattactgttaaaaacaacaacaacaacaacaacaaaaacaa-aaa--caaaaaaaa 160

                                                                       
Query: 361 accaaaaaaaaaaaaaaacccaaacagacccagaatctctgggaccataaaatagctgag 420
           |        || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 a--------aacaaaaaacccaaacagacccagaatctctgggaccataaaatagctgag 108

                                                                       
Query: 421 agggtaaaaattctgggcagtaaacctcccttcctgatcttggtctctataatttgcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agggtaaaaattctgggcagtaaacctcccttcctgatcttggtctctataatttgcatg 48

                                                          
Query: 481 gtaacagaaagaactctttcctgcagattgtcctctgatctctgcac 527
           |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 47  gtaacagaaagaactctttcctgcaggttgtcctctgatctctgcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)