Query= MSMg01no535_f15.b1 MSMg01no535_f15.b1 CHROMAT_FILE:
MSMg01no535_f15.b1 PHD_FILE: MSMg01no535_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:09 2005
(721 letters)
>mm_chr1_178680153_178681275
Length = 1123
Score = 1363 bits (705), Expect = 0.0
Identities = 715/719 (99%), Gaps = 2/719 (0%)
Strand = Plus / Minus
Query: 5 gaattctctcttgttccttaaatgtcagtgattgtgaggttttgtagtctcatgctttgt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gaattctctcttgtgccttaaatgtcagtgattgtgaggttttgtagtctcatgctttgt 807
Query: 65 agagtttacaccattgtctagtttgaccatatgtttttggtgttaaagcagcaaagaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agagtttacaccattgtctagtttgaccatatgtttttggtgttaaagcagcaaagaatt 747
Query: 125 gtactgaagatgctttgttgtgttcttttaccatgtaaagagactttttccaaccatagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtactgaagatgctttgttgtgttcttttaccatgtaaagagactttttccaaccatagc 687
Query: 185 ataacaggatgttgaatgacagaggtaa--ttttttttttccgccataaaggcataattt 242
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 686 ataacaggatgttgaatgacagaggtaatgttttttttttccgccataaaggcataattt 627
Query: 243 ctggacaggaattatgcacatatgtatgttgggaaaagagggttttcttcatctctgtgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctggacaggaattatgcacatatgtatgttgggaaaagagggttttcttcatctctgtgt 567
Query: 303 tcaaagtccatgtggcatgaggaagtcttttccctttttatttttgtcttgttggtgttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaaagtccatgtggcatgaggaagtcttttccctttttatttttgtcttgttggtgttt 507
Query: 363 ttgctgtcatttaaaaagcatccatatctcgactcaaaaagtatgtgcaactgaaaacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgctgtcatttaaaaagcatccatatctcgactcaaaaagtatgtgcaactgaaaacac 447
Query: 423 ccttgttaagcatttatgactagagcttgtttatcattagtgaactttttcatctgaatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccttgttaagcatttatgactagagcttgtttatcattagtgaactttttcatctgaatg 387
Query: 483 tttattcgctacactatgaaaaacacggtcttttgattgtttttaatcattgtttttaat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttattcgctacactatgaaaaacacggtcttttgattgtttttaatcattgtttttaat 327
Query: 543 tcaccaatgtataatgtttcaatctttaaggaactgtagacttagaattttttgtgaggt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaccaatgtataatgtttcaatctttaaggaactgtagacttagaattttttgtgaggt 267
Query: 603 atgtgtgtcagttactgaaaattgtgctgtgtgtgaactctcgtggtgatcttataatca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 atgtgtgtcagttactgaaaattgtgctgtgtgtgaactctcgtggtgatcttgtaatca 207
Query: 663 tgatttttatttaaaaagtttaaatgataacataataactctttttttaataattaaac 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tgatttttatttaaaaagtttaaatgataacataataactctttttttaataattaaac 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1123
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1113
Effective search space: 791343
Effective search space used: 791343
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_f15.g1 MSMg01no535_f15.g1 CHROMAT_FILE:
MSMg01no535_f15.g1 PHD_FILE: MSMg01no535_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:09 2005
(462 letters)
>mm_chr1_178537689_178538550
Length = 862
Score = 791 bits (409), Expect = 0.0
Identities = 447/461 (96%), Gaps = 5/461 (1%)
Strand = Plus / Plus
Query: 1 cagatgattgcatcctgtgccagtattaagtagtgagtacaacttaaccaaggaagagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgattgcatcctgtgccagtattaagtagtgagtacaacttaaccaaggaagagga 260
Query: 61 aaggaaaaatgttttcaagaaaaggttacaaatgatgcacatgcacttttgtggaaatat 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaaagatgttttcaagaaaaggttacaaatgatgcacatgcacttttgtggaaatat 320
Query: 121 aagtggttaattaagcttgatgaaactgtatgaagaggccagtcaggtggtgagactaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aagtggttaattaagcttgatgaaactgtatgaagaggccagtcaggtggtgaggctaga 380
Query: 181 ggccatgtgtaacagatcctttgggcatgtccacctttttgacatcccaaaaaaatgtca 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ggccatgtgtaacagatcctttgggcatgtccaactttttgacatcccaaaaaaatgtca 440
Query: 241 tctacagagtacatacttgggaatcatacaactgaattttttttaaaaaa-tcacaaaaa 299
|||||||||| |||||||||||||||||||| ||||||||| |||| | |||||||||
Sbjct: 441 tctacagagttcatacttgggaatcatacaattgaattttt---aaaatagtcacaaaaa 497
Query: 300 aatctcataatattataaacttatgatttgtgttggtttgttttcatagttctcctaggc 359
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 a-tctcataatattgtaaacttatgatttgtgttggtttgttttcatagttctcctaggc 556
Query: 360 catacgtgacctatgggatatgggttggacatttctgagtcatggtcaaagtttagactt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catacgtgacctatgggatatgggttggacatttctgagtcatggtcaaagtttagactt 616
Query: 420 tactgaatgctgagagaaatgaaacagcaccatgtccatat 460
||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 617 tactgaaggctgagagaaatgaaacagcagcatgtccatat 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
