ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGGCTGCTGCTGGTTTCCTTCCAATCCCTACTCAAACTCACCAG
GCTAAGCTTCTTAAAGCTGTTTGTTTGTTTGTTTGTTTTTTTGTTTGTTT
CGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT
TACTCTGTAGACCAGGATGGCTTCAAATTCAGAAATCCATCTGCCTCTGC
CTCCCAAGTGCTGAGATTAAAGGCTTGTGCCACCATGCCCGGCTAAGCTT
CTTAAATCTTACTTGATCACAGAAACCTTGGCCTCCATTACTCTCAGCAT
ATTCTGCTTGCACTAGGTCTTCATCATGTGCATCTATCTGTGGTTCTAAC
TTTGCCATCTACAATGTTTTCTGCTTGAACATCTGGCTCTTTGTAAGTCA
TGCTGTTGAGTCAAAATGGGAATTTATCTACATTTTTGCTATTGAATTTC
CACCCACTCTTCCAGGATATGAATCCATCACCCTTGGTCATTACAATACC
TGCTCCAGATGTCTTAATGTTGCCCCGTTACAACATATAACGCCCTTCCA
GTCTTTTGATGTGGCCCTTCTCCCTTCATTTAAAAATTCCTTTACAGTGA
GCCAATCTCCTGCCTCATTCTGAATGCACTTTTTTGAGGCTCCTGTAAGA
AAAAGACAGGCCATTCCAGGACCCACCTGGATCCTCTGTGACTTTACCAC
AGACC

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGAAGGGGGCTTCATGGACCTAAA
AAACAGAGGCTGCTGCAGTGTGAGCCACCTTGTCAGAAAGATATTAAGGA
AGGAAATAACAAGATTTAGAGAGTGGTGATTTCATGGCAAGATCCCTCCA
GCTAAGTTTATTGTTTGGACTACTCAGGCAGATTCCTGAATTCAAGGTTA
GCTTGGGACAGAGCTAGTTGAAGCCCAGGAGTGGTGGGGATCCCACCCAG
CTAGCTTATTGTCTTTACTTATAGCAAGCAGATATCTGAATTCATTTGCC
ATGTTTTGTTTTATTTTGTTTTTTAAGAATTTGCTGTTCTTTTATTAGAA
TCAAGTTGCTACAGTCATAAAATGCTGACTCGTGGGATAACCAAAAAAGA
ACCTCAAGAAAATGACTGAATTGATATGCAAATGAAAGACTGGGCTTTGG
TCTGCAAGAGCTAAGCAACCTGGATGAGCTGTCTGGAGAGAAAACAGAGT
TCTTTTAGAATTTTTTTCTAGCAGCTACCCAGAGAGAACTGCTTGGAGAG
CAAATACAGGTCTTTTACAATCTTTTTCCTGCAAGAGAGCAAAAGAGAGC
TGTCTCAGGCAGAGGAAACTGTCTCATGCAGAAAGCTGTCTTGAGCAGAA
AGCTATCTTGAGCATACTACAGATCCAAGAGCTATCTAGAGAGAGCTGTC
TAGGGAGCCATCTTG

Query= MSMg01no535_g14.b1 MSMg01no535_g14.b1 CHROMAT_FILE:
MSMg01no535_g14.b1 PHD_FILE: MSMg01no535_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:13 2005
         (696 letters)



>mm_chr1_87474927_87476022
          Length = 1096

 Score = 1243 bits (643), Expect = 0.0
 Identities = 680/693 (98%), Gaps = 5/693 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttggctgctgctggtttccttccaatccctactcaaactcaccaggctaagct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctttggctgcagctggtttccttccaatccctactcaaactcaccaggctaagct 267

                                                                       
Query: 65  tcttaaagctgtttgtttgtttgtttgtttttttgtttgtttcggttttttgagacaggg 124
           |||||||||  ||| ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 268 tcttaaagc--ttt-tttgtttgtttgtttgtttgtttttttcggttttttgagacaggg 324

                                                                       
Query: 125 tttctctgtgtagccctggctgtcctggaacttactctgtagaccaggatggcttcaaat 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 tttctctgtgtagccctggctgtcctggaacttactctgtagaccaggctggcttcaaat 384

                                                                       
Query: 185 tcagaaatccatctgcctctgcctcccaagtgctgagattaaaggcttgtgccaccatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagaaatccatctgcctctgcctcccaagtgctgagattaaaggcttgtgccaccatgc 444

                                                                       
Query: 245 ccggctaagcttcttaaatcttacttgatcacagaaaccttggcctccattactctcagc 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 ccggctaagcttcttaaatcttacttgatcacagcaaccttggcctccattactctcagc 504

                                                                       
Query: 305 atattctgcttgcactaggtcttcatcatgtgcatctatctgtggttctaactttgccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atattctgcttgcactaggtcttcatcatgtgcatctatctgtggttctaactttgccat 564

                                                                       
Query: 365 ctacaatgttttctgcttgaacatctggctctttgtaagtcatgctgttgagtcaaaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctacaatgttttctgcttgaacatctggctctttgtaagtcatgctgttgagtcaaaatg 624

                                                                       
Query: 425 ggaatttatctacatttttgctattgaatttccacccactcttccaggatatgaatccat 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 ggaatttatctacatttttgctattgaatttccacccactcttccaggatattaatccat 684

                                                                       
Query: 485 cacccttggtcattacaatacctgctccagatgtcttaatgt-tgccccgttacaacata 543
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct: 685 cacccttggtcattacaatacctgctccagatgtcttaatgtct-ccccgttacaacgta 743

                                                                       
Query: 544 taacgcccttccagtcttttgatgtggcccttctcccttcatttaaaaattcctttacag 603
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 744 taacgcccttccagtcttttgatgtggcccttcccccttcatttaaaaattcctttacag 803

                                                                       
Query: 604 tgagccaatctcctgcctcattctgaatgcacttttttgaggctcctgtaagaaaaagac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgagccaatctcctgcctcattctgaatgcacttttttgaggctcctgtaagaaaaagac 863

                                            
Query: 664 aggccattccaggacccacctggatcctctgtg 696
           |||||||||||||||||||||||||||||||||
Sbjct: 864 aggccattccaggacccacctggatcctctgtg 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)