Query= MSMg01no535_i08.b1 MSMg01no535_i08.b1 CHROMAT_FILE:
MSMg01no535_i08.b1 PHD_FILE: MSMg01no535_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:22 2005
(727 letters)
>mm_chr1_43240930_43242056
Length = 1127
Score = 1321 bits (683), Expect = 0.0
Identities = 709/718 (98%)
Strand = Plus / Plus
Query: 8 gaattcttaatcttccttcccaaggtgaggtttctttctgattttctattttttctaatg 67
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaatccttaatcttccttcccaaggtgaggtttctttctgattttctattttttctaatg 267
Query: 68 tatttcaatttgctatttggaatacattgggctgaattcacggaattgatatgctaatac 127
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 268 tatttcaatttgctatttggaatacattgggctgcattcacggaattgatatgctaatac 327
Query: 128 tatgattcctgatatgctaggaaactgtagaaattcaaacgttttatgaaaactcaagta 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tatgattcctgatatgctaggaaactgtagaaattcaaacgttttatgaaaactcaagta 387
Query: 188 aagaaggagtgcttatgaatctttggagaggacagcagagataaacgcactctaactcag 247
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 388 aagaaggagtgcttatgaatctttggagaggacagcagagataaatgcactctaactcag 447
Query: 248 ggcaatgtcataaaatagccagtgaatagggccagatctccaatattaatagccattgca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggcaatgtcataaaatagccagtgaatagggccagatctccaatattaatagccattgca 507
Query: 308 ctttggagatagtgtagtgagagccagcatgcaagcaactgaacttcagcacttctgatc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctttggagatagtgtagtgagagccagcatgcaagcaactgaacttcagcacttctgatc 567
Query: 368 ttctacacgcaaggaattcaaatatttgaggctgcaggcaagctcacagaggccacgtgt 427
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttctacaggcaaggaattcaaatatttgaggctgcaggcaagctcacagaggccacgtgt 627
Query: 428 ttacagtataggcagcgttgcttggggcccttagggctgctgttctgagaattctagcca 487
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttacagtgtaggcagcgttgcttggggcccttagggctgctgttctgagaattctagcca 687
Query: 488 ttgtattttggctctgccttaaacgagggtaacaaagacttccccaagcaaacttttggg 547
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 688 ttgtattttggctctgccttaaacgatggtaacaaagactttcccaagcaaacttttggg 747
Query: 548 cctgacatacaaacatgcatcccttaagtgatgaagtcacattcccagaactataaagtt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cctgacatacaaacatgcatcccttaagtgatgaagtcacattcccagaactataaagtt 807
Query: 608 tggcaatttcattatccggcagttttgtcactgagtgaacgtcaaagcatgtacttcttc 667
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 808 tggcaatttcattatccggcagttttgtcaccgagtgaacgtcaaagcatgtacttcttc 867
Query: 668 aaccttagatgatgtggcctcccacgtgcttaggctagaanggtcaacctattgcttc 725
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 868 aaccttagatgatgtggcctcccacgtgcttaggctagaagggtcaacctattgcttc 925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1127
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1117
Effective search space: 800889
Effective search space used: 800889
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no535_i08.g1 MSMg01no535_i08.g1 CHROMAT_FILE:
MSMg01no535_i08.g1 PHD_FILE: MSMg01no535_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:22 2005
(563 letters)
>mm_chr1_43419795_43420756
Length = 962
Score = 1065 bits (551), Expect = 0.0
Identities = 560/563 (99%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 1 tcaggacctgttgaactggagcaggctctacggaaaccaaggcaggcctgattactagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tcaggacctgttgaactggagcaggctctacggaaaccaaggcaggcctgattactagca 703
Query: 61 ggtcctctattcttttccctaattcctttgacatgaagactgccctccccatgaaattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggtcctctattcttttccctaattcctttgacatgaagactgccctccccatgaaattgg 643
Query: 121 ctgtgatgtgtggtcccagtggccctctcatttttcaataacctggaacctttagctttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 642 ctgtgatgtgtggtcccagtggccctctcatttttcaataacctggaacctttagc-ttt 584
Query: 181 ttctgggttaaccacaataggtctaagcacctacccactaaacttgggagacattggttg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 583 ttctgggttaaccacaataggtctaagcacctacccactaaacttgggagacgttggttg 524
Query: 241 aattcagtccaatttagatttgggacaagacagtgtgctcttcctccccggaatttgccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aattcagtccaatttagatttgggacaagacagtgtgctcttcctccccggaatttgccc 464
Query: 301 tcgagggagcctgggcaaattgtcaaggacggatgtctcccttcctgtgttcctttcact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcgagggagcctgggcaaattgtcaaggacggatgtctcccttcctgtgttcctttcact 404
Query: 361 cccccatcctgagaacattctctctcctccccctcatggctcagcatctccctctgcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cccccatcctgagaacattctctctcctccccctcatggctcagcatctccctctgcctc 344
Query: 421 tcaggaactggtcacctcctacctgctcttggcaccctagcctgagactctctccatttg 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcaggaactggtcatctcctacctgctcttggcaccctagcctgagactctctccatttg 284
Query: 481 cctcttcaaactccacaggctcagagctcacccctatatggtcttgcccacattaatgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cctcttcaaactccacaggctcagagctcacccctatatggtcttgcccacattaatgga 224
Query: 541 aaccgaggttgcaaagctgaggc 563
|||||||||||||||||||||||
Sbjct: 223 aaccgaggttgcaaagctgaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space: 526456
Effective search space used: 526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
