NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCCCATACCTAAACATGAGAAACGCAATCTACAGCAAACC
AGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCATTCCCACTAA
AATCAGGGACTAGACAAGGCTGCCCACCTTCTCCCCACCTATTCAACATT
GTACTTGAAGTCCTAGCCCGAGCAATTTGACAACAAAAGGAGATCAAGAG
GATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTGCATATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGACAACTTCTAAACC
TGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAG
TCAATGGCCTTTCTCTACACAAAGAATAAACAGGCCGAGAAAGAAATTAG
GGAAACAACACCCTTCTCAATAGTCACAAGTAATATAAAATACCTTGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCTGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCTAAAAGC
ATCTACAGATTCAATGCATCCCCCATCAAATTCCCACTCAATTCTCTTCG
ATTTAGAAAGAGCATCTGCAAATCTTCTGGATAACAAAAACCTATGATAG
CCAAAC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCAACCTTCACCA
AGATTCCAGCACTAGAAGGCCATTGGGTAGGGAGGGACAGCAAAGTCCCT
TTTATTTCTGCACCTTAGCAAGACAGCCTAGGGCAGGGAAGTCAGCACTG
TGGGAATGAATATATATAACATCTGCTGTCCTGAGCCTCAACTGTGGCTA
AAGAGAGAAACAGTGGAGGGGGCAGAAAGAGCGACACGCAAGCTCAGTAC
CTCATTCCGGAAGCAATCTCAACGCAGCCGCACCCCCGCGGTGCGATTCA
CCCTTTCTATCCCGGGACAGGGGCCAGGCCAGGCCCGCAGCGCGCATGTG
CGGTCACTTCATCGAGCCCTTCCCAGGAACTTACTGCTCACCCGCCTAGA
GAGTCCGAGCATGAGAATGGCTGCTCCTAAATCCAGGCTGGATTTTGCTG
CCCCCTCCCGGGCTGGCTGACACTTGCAGCATGTGCAGTATCTAAAGTCA
AGAGTCCTAGTTGATCTGGGTTCAAGGCTCCAGAGCCCTTACAGCTCATT
ATCTAGGCAGATCATGATCTGCTTTTATAAACTTCGGTGAAACCAGGATA
GCCAAGCTTATATGTCCCGGGAGGAATGACACAGAACTTCAGCGTTGGGA
AAGCATTTGGAAGTCTTCCAAGGCCAGGAAAATTCAGTTTTCCCCCCCGG
CAACCCTTTCTTTCCCAAAA

Query= MSMg01no535_l16.g1 MSMg01no535_l16.g1 CHROMAT_FILE:
MSMg01no535_l16.g1 PHD_FILE: MSMg01no535_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:38 2005
         (436 letters)



>mm_chr1_21156280_21157115
          Length = 836

 Score =  750 bits (388), Expect = 0.0
 Identities = 416/436 (95%), Gaps = 17/436 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcaaccttcaccaagattccagcactagaaggccattgggtagggagggacagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tctgcaaccttcaccaagattccagcactagaaggccattgggtagggagggacagcaaa 510

                                                                       
Query: 61  gtcccttttatttctgcaccttagcaagacagcctagggcagggaagtcagcactgtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtcccttttatttctgcaccttagcaagacagcctagggcagggaagtcagcactgtggg 450

                                                                       
Query: 121 aatgaatatatataacatctgctgtcctgagcctcaactgtggctaaagagagaaacagt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aatgaatatatataacacctgctgtcctgagcctcaactgtggctaaagagagaaacagt 390

                                                                       
Query: 181 ggagggggcagaaagagcgacacgcaagctcagtacctcattccggaagcaatctcaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggagggggcagaaagagcgacacgcaagctcagtacctcattccggaagcaatctcaacg 330

                                                                       
Query: 241 cagccgcacccccgcggtgcgattcaccctttctatcccgggacaggggccaggccaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cagccgcacccccgcggtgcgattcaccctttctatcccgggacaggggccaggccaggc 270

                                                                       
Query: 301 ccgcagcgcgcatgtgcggtcacttcatcgagcccttcccaggaacttactgctcacccg 360
           || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 269 ccacagcgcgcatgtgcggtcactttatcgagcccttcccaggaacttactgctcacccg 210

                                                                       
Query: 361 cctagagagtccgagcatgagaatggctgctcctaaatccaggctggattttgctgcccc 420
           ||||||||                 |||||||||||||||||||||||||||||||||||
Sbjct: 209 cctagaga-----------------gctgctcctaaatccaggctggattttgctgcccc 167

                           
Query: 421 ctcccgggctggctga 436
           ||||||||||||||||
Sbjct: 166 ctcccgggctggctga 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)