BAC Information

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BAC

Clone NameMSMg01-535M07
Chromosome1 (Build37)
Map Location 74,967,843 - 74,968,390
singlet/doubletsinglet
Overlap geneCcdc108
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2
Downstream geneIhh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535M07.T7 (MSMg01no535_m07.b1)MSMg01-535M07.TJ (MSMg01no535_m07.g1)
ACCAG603140AG603141
length757748
length of high quality
(start - end)		321 (51 - 371)548 (75 - 622)
definitionCHROMAT_FILE: MSMg01no535_m07.b1 PHD_FILE: MSMg01no535_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:41 2005CHROMAT_FILE: MSMg01no535_m07.g1 PHD_FILE: MSMg01no535_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATGCCTCTCAGCAGGAAAAGAAAGGGAAGGGAAAGGAAA
GGATGAATATGGGAAGATATGGGAATAAAAAGAGAAGACTGGGCTGAGGA
TGTACTCAGTTGGTAGAGTGCTTGCCCAGCCTGTGGGAAGTCATGGTTTG
ATTCCCAGCACCTCATACAATCAGCCTGGTGGTGTATACAGTAATCTCAG
CACTCAGGAGTGGAGGCAGGTGGATCATAAGTTCGAGGTTATTCTCAGCT
ACACACGGAGTTCAAGACAGTACATGAGACCCTGTCAAACACACACACAC
ACACACACACACACACACACTCACACGACAAACGAGCCCCAAACCACAAA
CAAATGTGCTAAGGAAAGGAGAGTTCTTTTAGAGCATCGATTCTCAACCT
TCCTAATGCTGTGACCCTTTAATACATTTCCTCATGGTGTGGTGACCCCC
CCGCCAGCCATAAAATTATTTTCATTGGTACTTCATAACTGTAATTTTGC
TGCTGGTATGAATTGTAACATAAATCTGTGTTTTCCTATGGTTGTAGGCG
ACCCTGCGAAATGGTCGTTGGATATCCCCAATGGAGTTCGATCCTTCGAT
TGAGAACTACCGTTCCAAGTATGGTTCTCTCATACTCTCTCTAGAGTGTA
CTCATTTATTGTTGATTAGAGAACTAGGCTCTTTTATTTGCCTGTTATTC
CCAAGAT

NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGCTGGCTGTGCCGTATGCAGAGA
TCTTGGCTCTCCTTGGAGACAGCATCATCCAAACCTGGGTGGGCCCCAAA
TGTGTATCTAGGGACGGAGAACTGAGGAAGGACGCCTTTCCCTCTTATTC
TCCCCACCTCCCAGACGTTCCCAGCAGTGTCTCCTGGAAAACCCTCCTAC
AGAAGCCTGTTTTTGGTCAACAAAGGCTCCATGCTCATGACCTTCAGCCT
GGCCCCCAATAGCAGCTCGGACATCACCCTGAGGCCCTCCTCTGGCCTCA
TCAGTCCTGGAGCCCACCAGGTCTTCCTTATAAGCACATACCCCAAGGGC
ACCTCATGGAGGCAGCACATTTTCTACCTGAACTTCAACTTTTATCCCCA
GTACCTCAAGGTAGGAGGCAGGGGTAGAGGAACTGGGCCTTTACTGGGTC
TTCAGGCCACCACGATTTGTCACTTTTTTTTCAAAACCACATTTTTAGGG
TCTGTGCCAACATATGGTGGGATGGGAGTGGGGGGCATTTCTTTAATGAG
GAGGAATGGGAGGGAGGGAGCTCTGGGCTCCACCCCTGGCGACTCAGCTA
CTTCCCAGTGAGTTGTCTGCTCCGTGGAGCTCAGGGCTGGAAAAAAATTG
CAAAGATCCCCGACTTATTTCTGAATGGGAGTACAAGGGCTGTTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_m07.g1 MSMg01no535_m07.g1 CHROMAT_FILE:
MSMg01no535_m07.g1 PHD_FILE: MSMg01no535_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:41 2005
         (548 letters)



>mm_chr1_74967643_74968590
          Length = 948

 Score = 1044 bits (540), Expect = 0.0
 Identities = 546/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctggctgtgccgtatgcagagatcttggctctccttggagacagcatcatccaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tttgctggctgtgccgtatgcagagatcttggctctccttggagacagcatcatccaaac 689

                                                                       
Query: 61  ctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgcctttccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctgggtgggccccaaatgtgtatctagggacggagaactgaggaaggacgcctttccctc 629

                                                                       
Query: 121 ttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccctcctacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttattctccccacctcccagacgttcccagcagtgtctcctggaaaaccctcctacagaa 569

                                                                       
Query: 181 gcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggcccccaatagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gcctgtttttggtcaacaaaggctccatgctcatgaccttcagcctggcccccaatagca 509

                                                                       
Query: 241 gctcggacatcaccctgaggccctcctctggcctcatcagtcctggagcccaccaggtct 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 508 gctcggacatcaccctgaggccctcctctggcctcatcggtcctggagcccaccaggtct 449

                                                                       
Query: 301 tccttataagcacataccccaagggcacctcatggaggcagcacattttctacctgaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccttataagcacataccccaagggcacctcatggaggcagcacattttctacctgaact 389

                                                                       
Query: 361 tcaacttttatccccagtacctcaaggtaggaggcaggggtagaggaactgggcctttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcaacttttatccccagtacctcaaggtaggaggcaggggtagaggaactgggcctttac 329

                                                                       
Query: 421 tgggtcttcaggccaccacgatttgtcacttttttttcaaaaccacatttttagggtctg 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgggtcttcaggccaccacaatttgtcacttttttttcaaaaccacatttttagggtctg 269

                                                                       
Query: 481 tgccaacatatggtgggatgggagtggggggcatttctttaatgaggaggaatgggaggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgccaacatatggtgggatgggagtggggggcatttctttaatgaggaggaatgggaggg 209

                   
Query: 541 agggagct 548
           ||||||||
Sbjct: 208 agggagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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