Query= MSMg01no535_m24.b1 MSMg01no535_m24.b1 CHROMAT_FILE:
MSMg01no535_m24.b1 PHD_FILE: MSMg01no535_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:44 2005
(559 letters)
>mm_chr1_187981437_187982395
Length = 959
Score = 1052 bits (544), Expect = 0.0
Identities = 553/556 (99%)
Strand = Plus / Minus
Query: 4 ggaattctttcttagcccatgactgaaaacagtgttcctcttgttaaagatactttttgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggaattctttcttagcccatgactgaaaacagtgttcctcttgttaaagatactttttgt 700
Query: 64 taatttgatttaaattcccattagactttaagttcaattcagatagaaattgggagtcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 taatttgatttaaattcccattagactttaagttcaattcagatagaaattgggagtcta 640
Query: 124 gatatacatgtatctcacagatcatggttcagcctttatttcatgctcagtaagtctttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gatatacatgtatctcacagatcatggttcagcctttatttcatgctcagtaagtctttg 580
Query: 184 ttgaatgactatatgagtattgataatgtgtataattaacaaacgatgtggtcatccata 243
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 579 ttgaatgactatatgagtattgataatgtgtataattaacaaacaatgtggtcatccata 520
Query: 244 gggaatattagtgagtagaaagaaggaatctagccaggtaacaaacactggaggttggta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gggaatattagtgagtagaaagaaggaatctagccaggtaacaaacactggaggttggta 460
Query: 304 ccaggtagtgtggcatcccatacagcatgtgactggaaatgacaggaaagaaatgacaga 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 459 ccaggtagtgtggcatcccatacagcatgtgtctggaaatgacaggaaagaaatgacaga 400
Query: 364 tatatagacacaggaaagctggggtcggatgggctgtgcaccctctgatggagatacacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tatatagacacaggaaagctggggtcggatgggctgtgcaccctctgatggagatacacc 340
Query: 424 accaatggctatagcctgagaaatcacttcattgattaaatacaacgcaggtagctagtc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 accaatggctatagcctgagaaatcacttcattgattaaatacaacgcaggtagctagtc 280
Query: 484 tcagtaggaggctacagttgctagtttttgtacacactggtcagctgttcataaattctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcagtaggaggctacagttgctagtttttgtacacactggtcagctgttcataaattctt 220
Query: 544 atgcttgggcatagga 559
|| |||||||||||||
Sbjct: 219 atacttgggcatagga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_m24.g1 MSMg01no535_m24.g1 CHROMAT_FILE:
MSMg01no535_m24.g1 PHD_FILE: MSMg01no535_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:44 2005
(561 letters)
>mm_chr1_187947049_187948009
Length = 961
Score = 996 bits (515), Expect = 0.0
Identities = 549/561 (97%), Gaps = 3/561 (0%)
Strand = Plus / Plus
Query: 1 acagagctccacccacctctggtccttacagctgcttcaagataaaacacacaaaaaaat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 acagagctccacccacctctggtccttacagctgcttcaagataaagcacacaaaaaaat 262
Query: 61 aagaaatgcaccactcgataggatatatatatatatatatatatatatatatatatatat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagaaatgcaccactcaataggatatatatatatatatatatatatatatatatatatat 322
Query: 121 atatatatatatataccaaattaacttttacccaatatagtgtctttattaattatttga 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atatatatatata--ccaaattaacttttacccaatatagtgtctttattaattatttga 380
Query: 181 gaattttatacactgcaccctggtagaaaatctgaacaccagctttgcaaaccttaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattttatacactgcaccctggtagaaaatctgaacaccagctttgcaaaccttaagta 440
Query: 241 gcaagcgcaactgcttgttttactttgtatcagtgatgacattgaaaagtgagaggctcc 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gcaagcgcaactgcttgttttactttgtatcagtgatgacattgaaaaatgagaggctcc 500
Query: 301 cctctcctcctcccctccccctcccatcctcttttttccctttttctcccctcccctgtc 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cctctcctcctcccctccccctcacatcctcttttctccctttttctcccctcccctgtc 560
Query: 361 ctatactatctccccttcccccccttctctctccttctcttagctcctccataactcttt 420
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ctatactatctcccctttccccccttctctctccttctcttaactcctccataactcttt 620
Query: 421 ccctccccccttccccctccatcctcttcactctctcacccctcccatcctctcctctac 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctccccccttcccc-tccatcctcttcactctctcacccctcccatcctctcctctac 679
Query: 481 cttcctctttctcctcccagttttgtctcctcttttatttccttctccatccattctccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttcctctttctcctcccagttttgtctcctcttttatttccttctccatccattctccc 739
Query: 541 cttccctcctttctcttttcc 561
|| |||||||||||| |||||
Sbjct: 740 ctcccctcctttctcatttcc 760
Score = 99.3 bits (51), Expect = 7e-25
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 84 tatatatatatatatatatatatatatatatatatatatatatatatatat 134
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tatatatatatatatatatatatatatatatatatatatatatatatatat 285
Score = 97.4 bits (50), Expect = 3e-24
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 83 atatatatatatatatatatatatatatatatatatatatatatatatat 132
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atatatatatatatatatatatatatatatatatatatatatatatatat 285
Score = 97.4 bits (50), Expect = 3e-24
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 86 tatatatatatatatatatatatatatatatatatatatatatatatata 135
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tatatatatatatatatatatatatatatatatatatatatatatatata 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 10
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
