Query= MSMg01no535_n17.b1 MSMg01no535_n17.b1 CHROMAT_FILE:
MSMg01no535_n17.b1 PHD_FILE: MSMg01no535_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:47 2005
(382 letters)
>mm_chr1_179457342_179458123
Length = 782
Score = 636 bits (329), Expect = 0.0
Identities = 359/371 (96%), Gaps = 4/371 (1%)
Strand = Plus / Minus
Query: 4 ggaattccacatggggtctcaggagccctggcttcagtgatggtgtgagttccttccaat 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggaattccacatggggcctcaggagccctggcttcagtgatggtgtgagttccttccaat 312
Query: 64 ctggcttcagttctcctgaaagctcagtcacaccacggccacagttatgaagaagaccaa 123
||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 311 ctggctttagttctgctgaaagctcagtcacaccacggccacagttataaagaagaccaa 252
Query: 124 gaataacatcaactttccaatctctgatagcctctccaatcctttgatagcctgtggtat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gaataacatcaactttccaatctctgatagcctctccaatcctttgatagcctgtggtat 192
Query: 184 ataaggaattccagattagcttgggctagtgagaccctgtct----caaacaaacaaacg 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 191 ataaggaattccagattagcttgggctagtgagaccctgtctcaaacaaacaaacaaaca 132
Query: 240 aagtgaatcttttaaggatgttcattttattttgtctatttttgtttgagaatgggtaat 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 131 aagtgaatcttttaaggatgttcattttattttgtctatttttgtttgtgaatgggtaat 72
Query: 300 gggtgtgtatatgtgtacctttgtgtctcccacagcacaggtgtgaaggttggaggagaa 359
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 71 gggtgtgtatgtgtgtacctttgtgtctcccacagcacaggtatgaaggttggaggagaa 12
Query: 360 tttcacatctg 370
|||||||||||
Sbjct: 11 tttcacatctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_n17.g1 MSMg01no535_n17.g1 CHROMAT_FILE:
MSMg01no535_n17.g1 PHD_FILE: MSMg01no535_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:47 2005
(590 letters)
>mm_chr1_179321202_179322191
Length = 990
Score = 1075 bits (556), Expect = 0.0
Identities = 576/590 (97%), Gaps = 12/590 (2%)
Strand = Plus / Plus
Query: 1 agtcaggaaaaggggccctactatctggttttatgaaaactctggatccacaataaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcaggaaaaggggccctactatctggttttatgaaaactctggatccacaataaaact 260
Query: 61 tgctctgtattaactatgcaactatagttcaatagtactttggtgattctagaatactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctctgtattaactatgcaactatagttcaatagtactttggtgattctagaatactgt 320
Query: 121 attagagagatggctaataacctattcagacccatggcatagaaacaggtagcattctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagagagatggctaataacctattcagacccatggcatagaaacaggtagcattctgg 380
Query: 181 ccagcagacacaaggaagaaggggaggaccccaagggatgcatagtagtgaagcagtata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcagacacaaggaagaaggggaggaccccaagggatgcatagtagtgaagcagtata 440
Query: 241 ggagctgtcactggaaatgaaaaaattattcatacaatagccaagatcccatgtcctgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagctgtcactggaaatgaaaaaattattcatacaatagccaagatcccatgtcctgag 500
Query: 301 aaattaggatatatatcaagagaagtataattaactagtcaaaaaattaaattaattaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattaggatatatatcaagagaagtataattaactagtcaaaaaattaaattaattaat 560
Query: 361 tttcattaaacgtattcagccaaagtatatgaaaaagataaatgtacaagattatggaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcattaaacgtattcagccaaagtatatgaaaaagataaatgtacaagattatggaat 620
Query: 421 ccttgtcaggacaagggttaggtgtagggtgggtggaaaatgcttaatgacctgaatggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttgtcaggacaagggttaggtgtagggtgggtggaaaatgcttaatgacctgaatggt 680
Query: 481 aactctgggacgtattacgacctgacctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 540
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 aactctgggacgtattaggacctgacctttgtgtgtgtgtgtgtgtgtg----------- 729
Query: 541 gaaagatttatttatttaatatatataggtacactgtatctgtctcagat 590
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 730 -aaagatttatttatttaatatatataagtacactgtatctgtctcagat 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
