BAC Information

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BAC

Clone NameMSMg01-535O20
Chromosome1 (Build37)
Map Location 37,595,813 - 37,596,168
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
Downstream gene2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535O20.T7 (MSMg01no535_o20.b1)MSMg01-535O20.TJ (MSMg01no535_o20.g1)
ACCAG603262AG603263
length780759
length of high quality
(start - end)		493 (50 - 542)574 (76 - 649)
definitionCHROMAT_FILE: MSMg01no535_o20.b1 PHD_FILE: MSMg01no535_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:53 2005CHROMAT_FILE: MSMg01no535_o20.g1 PHD_FILE: MSMg01no535_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTAAATGTATCTTCCCTAAAACGGGGTTTGCTAACTTCTT
AGGCAAAGTATTTTTGCTTCTATATGCTTCTAGGGTATTATGGATGGCTA
ATCTATAGCATTTATACATTTATATAGGCTTCATTTGTATGTAATAAAAC
AACTTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTTTTTTGTTGTTGTTTC
TTGAAACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTGCTCTG
TAGACCAGACTTATAGAGATCTGTCTGTCTTTGCCTCCCAAGTGCTTGCA
TTAATGGCATGGGCCACCACCACTTAGTTTAATAAAAACTTTTTTTTTTT
TTAAAGATTTATATATTTATTATGTGTATAGCACTCTGCTTACATGTATC
CCTACAGGCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCC
ACCATGTGGTTGCTGGGAATTGAACTCAGGCCTTCTGGAAGAGCAGACAG
TGCTCTTAACTGCTGAGCAATCTCTCCAGCCCCATTAATAAAACCTTTTA
AATTATCATTTTAGAATGATTCTGCATATCTCTACTTCCTGATTTATGTC
AGCTAGATATTTATTCTAATAATCAGCTCTACCTGCCCTTCCCCAACAAA
ATCCTCCCTGAAGCAAAATATGACTATATATAGACAGAAAGTGAAAAGTG
TGTTTGTATAATGTCATACCAGGCTAAAAA

NAATCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATATTGGCTTAGCACACCTGTCTTA
GTTAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGG
AAGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACCAA
AGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCA
GAGGTCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCA
ACCTGCTCTCTTATAGAACCAAGACTACCAGCCCAGAGATGGCACCACCC
ACAAGGGGACCGCCCCACTTGATCACTAGTTGAGAAAATGCCTTACAGTT
GGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAAC
TCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAACACCCGAAGAC
CAAGTTCTCAGCACAGAGAAACAAAGGGCAGGGAATAAGAGACAAAGACA
TCACAGATGAGGGAGAAGGGAAAGGGAACAAGGGAGTGGCAGGACAGAGA
TATTTGTCCCTGGGGAGGGGGTTGTGGACACAAAGGACTACCTCTGAATA
GAGAGGAGACAGATGTGGCACATAGGAAAATGGCAGTTTATAATGGTAAA
AGGGGAAAACTCATGTTAGAATGAGGGGTTTCATTTTTCATGGGCATGTT
AATTAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_o20.b1 MSMg01no535_o20.b1 CHROMAT_FILE:
MSMg01no535_o20.b1 PHD_FILE: MSMg01no535_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:53 2005
         (493 letters)



>mm_chr1_37595813_37596705
          Length = 893

 Score =  431 bits (223), Expect = e-125
 Identities = 312/357 (87%), Gaps = 29/357 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctaaatgtatcttccctaaaacggggtttgctaacttcttaggcaaagtattt 64
           |||||||||||  ||||||||||||||| ||||||||||||||||||||||  |||||||
Sbjct: 356 gaattccctaaccgtatcttccctaaaatggggtttgctaacttcttaggcccagtattt 297

                                                                       
Query: 65  -ttgcttctatatgcttctagggtattatggatggctaatctatagcatttatacattta 123
             | | || |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 296 aatac-tccatatgcttctggggtattatggatggctaatctatagcatttatactttta 238

                                                                       
Query: 124 tataggcttcatttgtatgtaataaaacaacttttcttt-tctctctctctctctctctc 182
           ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 237 tataggcttcatttgtatgtaataaaacaacttctctctctctctctctctctctctctc 178

                                                                       
Query: 183 tcttt---------------tttgttgttgtttcttgaaacaggatttctctgtgtagcc 227
           ||| |               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tctctctctctctctctctctttgttgttgtttcttgaaacaggatttctctgtgtagcc 118

                                                                       
Query: 228 ctggctgtcctggaacttgctctgtagaccagact----t-------atagagatctgtc 276
            ||||||||||||||||||||||||||||||||||    |       ||||| |||||||
Sbjct: 117 ttggctgtcctggaacttgctctgtagaccagactggcctcgaactcatagatatctgtc 58

                                                                    
Query: 277 tgtctttgcctcccaagtgcttgcattaatggcatgggccaccaccacttagtttaa 333
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 57  tgtctttgcctcccaagtgcttgcattaatggcatgggccaccaccacttagcttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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