BAC Information

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BAC

Clone NameMSMg01-535O24
Chromosome1 (Build37)
Map Location 7,084,623 - 7,085,158
singlet/doubletsinglet
Overlap genePcmtd1
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608
Downstream geneLOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535O24.T7 (MSMg01no535_o24.b1)MSMg01-535O24.TJ (MSMg01no535_o24.g1)
ACCAG603270AG603271
length763768
length of high quality
(start - end)		544 (50 - 593)525 (83 - 607)
definitionCHROMAT_FILE: MSMg01no535_o24.b1 PHD_FILE: MSMg01no535_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:54 2005CHROMAT_FILE: MSMg01no535_o24.g1 PHD_FILE: MSMg01no535_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAACACCNCCCTGTAAATTGGGGCCGCTATCGACTCACTATATTTAG
AGGATCCGCGGAATTCCTGGCAAGGAGCTGCAAAAGCTTTCCACAATAGA
TAATGTGGATTCTTTTCAGATTATTAGGAAATGGTAGATTGCTCATCTGA
AAACTAATTTACTTGAGTGCTTGGTTCCTTGATATACTGAGTTTGTAAAA
AAATCAGTGTTTTGGTATGTGAATTTTCCATGCTGTCAAGTTGACCCAGC
TTCCTAATGAACTGCAGAATTCTAATGAACCACTTCACAGTTTCTTCTGT
GTATGCAGAGATAGAAAAGATTTAGCAAAATCACGTGTGTTCTTTTGTTT
TTGTTTTGTTATATTTGGAAGTTGTAATCATCTAATCATCTGGATGCTCA
CACAGATTGGATGCTACATCAGGTTCTGAGTTCAGTCCCTAGACTCACTG
TCACCACCGGAAAAATCAAAAGAAAAATCAAAAGAAAACAAAAAAGCCCA
AACAAATGAACAAATAAACAAAACTAGTAGTTGAACTTTCGGTGAGGGGA
AAATCAGATTCTTGTTTTAAAAAATATTTATTTACTTAATGTATGCGAAG
GTTCTGTCCATATGAATGCCTGCAGGCTAGAAGAGGGCATCAGATCCCAT
TATACATGGTTGTGAGACACTATTTGATTGCAGGGAATTGTCTGGAAGAG
TAGCTAGTGCTTTTAACTGGTGAGGCATGTCTCTAGTCTCAGGGAAAATC
TAGTTTAAAGCTG

GTGTTTCACCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTCCATGTTTACTG
CATTGCATCCACTGTCTGTCCTTCCCAAGAGACTGAATCTGTGCTTGCCT
GAAGGCTGTCTTATGAATCTATCCCTGTGTCTGTGTTTGCCCCCGTGCAT
GACTGTTGGGTGTCTATGTGTGTTTGTGTAGCAAAGGTCTTTCACTCTGT
ATTTACTGAACAACACAGAAAGCATCAATGGGTGTATGAAAGACAGTTTT
AAAAACCCTTTAACAGAATTTCACAAGGAATTAAGTCACTTATTCCAACT
TATCCAAACAGACCCAGATAACAAACAGAATTAGAAAAGTCATTGTTTAT
CAGTCAATACCAAAACTTTGTGTGTAATTAATTATGCATAGGAATTATCT
TCAACATGTGTGGTGGTTATTCACTTCATAAGATTTCAGCCCCAATTTCT
GCTGTTTCCAGAAAATAATTTATAGGTATAACTTTGGGTAAGGATAAGGA
AAAGTACATATTTTAAGATTATACTTATGTATTATCTTAGATTACAAAAG
TTAATTTCATGGGAAATCTAAAGCAAGTAAGTTTTGATGATTTATGAGAA
TGTAGTTCTCTTAATGGTAGGTTAAACAAACAGGTTGGTGTACCATAGGA
TATCTATCTTAAATCATAAGTGACATAAAGGTGTACTAGTAACTGGGTAT
TAGATCCTGTAAAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_o24.b1 MSMg01no535_o24.b1 CHROMAT_FILE:
MSMg01no535_o24.b1 PHD_FILE: MSMg01no535_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:54 2005
         (544 letters)



>mm_chr1_7084412_7085358
          Length = 947

 Score =  990 bits (512), Expect = 0.0
 Identities = 529/536 (98%), Gaps = 3/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattcctggcaaggagctgcaaaagctttccacaatagataatgtggattcttttcaga 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattcctggcaaggagctgcaaaagctttccacaatagataatgtggattcttttcaga 271

                                                                       
Query: 72  ttattaggaaatggtagattgctcatctgaaaactaatttacttgagtgcttggttcctt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttattaggaaatggtagattgctcatctgaaaactaatttacttgagtgcttggttcctt 331

                                                                       
Query: 132 gatatactgagtttgtaaaaaaatcagtgttttggtatgtgaattttccatgctgtcaag 191
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggtatactgagtttgtaaaaaaatcagtgttttggtatgtgaattttccatgctgtcaag 391

                                                                       
Query: 192 ttgacccagcttcctaatgaactgcagaattctaatgaaccacttcacagtttcttctgt 251
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 392 ttgacccagcttcctaatgaactgcagaactctcatgaaccacttcacagtttcttctgt 451

                                                                       
Query: 252 gtatgcagagatagaaaagatttagcaaaatcacgtgtgttcttttgtttttgttttgtt 311
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtatgcagagattgaaaagatttagcaaaatcacgtgtgttcttttgtttttgttttgtt 511

                                                                       
Query: 312 atatttggaagttgtaatcatctaatcatctggatgctcacacagattggatgctacatc 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atatttggaagttgtaatcatctaatcatctggatgctcacacagattggatgctacatc 571

                                                                       
Query: 372 aggttctgagttcagtccctagactcactgtcaccaccggaaaaatcaaaagaaaaatca 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aggttctgagttcagtccctagactcactgtcaccaccggaaaaatcaaaagaaaaatca 631

                                                                       
Query: 432 aaagaaaacaaaaaagcccaaacaaatgaacaaataaacaaaact---agtagttgaact 488
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 632 aaagaaaacaaaaaagcccaaacaaatgaacaaataaacaaaactcctagtagttgaact 691

                                                                   
Query: 489 ttcggtgaggggaaaatcagattcttgttttaaaaaatatttatttacttaatgta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttcggtgaggggaaaatcagattcttgttttaaaaaatatttatttacttaatgta 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 947
Length adjustment: 10
Effective length of query: 534
Effective length of database: 937
Effective search space:   500358
Effective search space used:   500358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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