Query= MSMg01no535_p23.b1 MSMg01no535_p23.b1 CHROMAT_FILE:
MSMg01no535_p23.b1 PHD_FILE: MSMg01no535_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:58 2005
(482 letters)
>mm_chr1_21314762_21315650
Length = 889
Score = 880 bits (455), Expect = 0.0
Identities = 475/485 (97%), Gaps = 7/485 (1%)
Strand = Plus / Plus
Query: 5 gaattcacctccctatgatatttagtggcttcctctttcagctgctaagcatttcccaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctccctatgatatttagtggcttcctctttcagctgctaagcatttcccaca 264
Query: 65 tctagggtctcttctt---tcttataaggtggcagctcaaaaactggatcagttatgctt 121
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctagggtctcttcttctttcttataaggtggcagctcaaaaactggatcagttatgctt 324
Query: 122 gattgtaggagtagatggcttagtttcactttttctcctccatggttgaagcatccccag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 gattgtaggagtagatggcttagtttcactttttctcctccatggttgaagcatccctag 384
Query: 182 acaggggctgcttctccaaaacctgcttctcctcctcatgtctaggatctaatccattgc 241
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 acaggggctgcttctccaaaacctgcttctcctccttgtgtctaggatctaatccattgc 444
Query: 242 taaccaaagtcaaaagtctacaagtatctacaggtactttacctgatccatgcacatcat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaccaaagtcaaaagtctacaagtatctacaggtactttacctgatccatgcacatcat 504
Query: 302 agtagtcttgaagtctttccccaaccttcttccaggtaactaaatttactgtaccttcct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtagtcttgaagtctttccccaaccttcttccaggtaactaaatttactgtaccttcct 564
Query: 362 caggtaaccaaggacaacgcttctctacaaaaatcttaaaaattctgtaattgctattgc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggtaaccaaggacaacgcttctctacaaaaatcttaaaaattctgtaattgctattgc 624
Query: 422 cttactttagccctgtgatcatgaagcatattctttttttttt----atgtttttttaaa 477
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 cttactttagccctgtgatcatgaagcatattctttttttttttttaatgtttttttaaa 684
Query: 478 attag 482
|||||
Sbjct: 685 attag 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 889
Length adjustment: 10
Effective length of query: 472
Effective length of database: 879
Effective search space: 414888
Effective search space used: 414888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_p23.g1 MSMg01no535_p23.g1 CHROMAT_FILE:
MSMg01no535_p23.g1 PHD_FILE: MSMg01no535_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:58 2005
(651 letters)
>mm_chr1_21495359_21496409
Length = 1051
Score = 1205 bits (623), Expect = 0.0
Identities = 644/651 (98%)
Strand = Plus / Minus
Query: 1 tctggaggttgctgtcaatctgttgaagcttatgtgattcaaacttgtacaggtaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tctggaggttgctgtcaatctgttgaagcttatgtgattcaaacttgtacaggtaaaagt 792
Query: 61 gcagagtgttcaaggaaccagaactaaagagacaggaaagtcgtgttctgggccttttag 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 791 gcagagtgttcaaggaaccagagctaaagagacaggaaagtcgtgttctgggccttttag 732
Query: 121 ctctgcagtcctgctacgttcttgtaggggaaactgagcacagagttctgtctactcaaa 180
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 731 ctctgcagtcctgctacgttctggtaggggaaactgagcacagagttctgtttactcaaa 672
Query: 181 acgatgcacatgaacgcttcagaaatagttttgagaaataaaatatattagttgtgtgac 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acgacgcacatgaacgcttcagaaatagttttgagaaataaaatatattagttgtgtgac 612
Query: 241 ttatggctgtctcaacctgtttcttgcagataccattgttctcatcgcttcaatagcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttatggctgtctcaacctgtttcttgcagataccattgttctcatcgcttcaatagcagt 552
Query: 301 tgtctctgcaaaaactcagggtaatattttcgccacgtcagcgctcagaagtctccggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgtctctgcaaaaactcagggtaatattttcgccacgtcagcgctcagaagtctccggtt 492
Query: 361 cctacagatcctgcgtatggtgcgcatggacagaaggggagggacctggaagctgctcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cctacagatcctgcgtatggtgcgcatggacagaaggggagggacctggaagctgctcgg 432
Query: 421 ctctgtggtttatgctcacagcaaggtaaaagtgcgctctctgcaccgtataagaaaaat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 431 ctctgtggtttatgctcacagcaaggtaaaagtgcgctctctgcaccgtataggaaaatt 372
Query: 481 tttgaaatgttctgttgattgcaatgtttaataaacttgacacaggcagttgctccagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttgaaatgttctgttgattgcaatgtttaataaacttgacacaggcagttgctccagat 312
Query: 541 tgtgattcaagctatttgaagccctgatgcgtaatgcattactttaaagcctttgttata 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgtttcaagctatttgaagccctgatgcgtaatgcattactttaaagcctttgttata 252
Query: 601 tttcctagaaataggagcatgattgaaccatatgtagagttcatgtttcca 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttcctagaaataggagcatgattgaaccatatgtagagttcatgtttcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
