BAC Information

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BAC

Clone NameMSMg01-536B02
Chromosome1 (Build37)
Map Location 149,292,435 - 149,374,723
singlet/doubletdoublet
Overlap genenone
Upstream geneB830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536B02.T7 (MSMg01no536_b02.b1)MSMg01-536B02.TJ (MSMg01no536_b02.g1)
ACCAG603370AG603371
length747740
length of high quality
(start - end)		696 (52 - 747)544 (56 - 599)
definitionCHROMAT_FILE: MSMg01no536_b02.b1 PHD_FILE: MSMg01no536_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:04 2005CHROMAT_FILE: MSMg01no536_b02.g1 PHD_FILE: MSMg01no536_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,374,032 - 149,374,723)(149,292,435 - 149,292,978)
sequence
NTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAAATTATTAATGATAATAATAATAACAACAAGAACAA
AATTTATGGAGAGGTACTTTTTACCAAATCGGTTCTTAATTTGGTCAATA
AAGAAAGTGGAAGTCGATTTCTGTGTGAAAGATAAAGATGGGACTTCCAG
GTCCCAGGAGGAAAAGTGGAGACTCAGGAAAAGAGAATATCTTCTTTTCA
ATAAGGCTTTGAAATGAGAAGCACTAACAACCATGTAAGATCTTGGGATA
GCAATAGAACTAGAAATCTCTGCAACCTGGAGCCTCAACCACATGCAGCA
GCTGGCTGATATGGACCAGCTGATATAGGTTAGCTGATAAGGTTAAGGCA
GGAGATTCAGTGCTGTACAAAGGTGTGATCTGGCTAGTTTTAAAATAGTA
AACTGTTTTTCTTCTGCAGAGCTAAGAGGGAAAGAAAAGATAGAAGCCAG
GGCAATAGCTGGTCGCTTGGTAGAGCTGAGCTTGGAAGAATGGGCAAATG
AGGAGTGAGGCAGGCTGCCTTCAATCTGGGAGCTAAGCTGGGGGAACAGG
CTGTGGTCCCAGGCAGAGGACCCGGCTTCTTTTTAAATTTACACCCAAAA
AGAAAAGGAAAAGTCAGGTGACAGCACTTGCTGGTGAGGATATAGAAAGA
GAACACTCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATTCATAGCACATACGGCCCCTCTCTTTATTTCCATGTGGAGCTG
TTTGTTAACTCTGCTTAATTAATTTAAATAATGAAGGCATAAGTAAAATG
TATTTGCTTAGCTATAATTTATTTTTAATGAGAATACATTAAATAAGCAG
CAAAATGTTGTAATAGAGTGGTATACATTTTGCTTCCCATATTATGCCCA
ATAGTCTAAATTTTAATAGACAAATATCTCTAGTGCAATATTTCAAATTT
ATATTGTGCAAGATATATATTATATATACATATATGTATACATACCTAGA
AACTACCACTAAGGAATGTTTAATAAACAAGAAAAAATACAGGAGTGCTT
TTATCTAAAACCAAGCTTATGTTTTTCATATAAGTATACCCAAAATATAA
CAAATATGAGAATTTGAAGAAATTATCCTACATCAAGAATATATATATTC
TCAATTATACTATCATCAAGTATAGATGGCTTTGAATACAACCTGCTTGG
CAGGTGTTCTCTGGAAAAAGCAATCACAGTTTTCAGGCAGAAATTGAAGT
CTGACCTCAAGGTTTACTGAGGATGGTGGAGGTTTGACAGCAAAAGCCCA
CAGCCAGGCTTCTTTATTTCTAAGCACATAGCAGGAAAGGGAATGAGGAT
CAGNATGTGTGCCTCTGATGTATGTTCTCTATCTAGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_b02.b1 MSMg01no536_b02.b1 CHROMAT_FILE:
MSMg01no536_b02.b1 PHD_FILE: MSMg01no536_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:04 2005
         (696 letters)



>mm_chr1_149373674_149374769
          Length = 1096

 Score = 1276 bits (660), Expect = 0.0
 Identities = 684/692 (98%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctcaaattattaatgataataataataacaacaagaacaaaatttatggagaggt 64
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gaattctcaaattaataatgataataataataacaacaagaacaaaatttatggagaggt 991

                                                                        
Query: 65   actttttaccaaatcggttcttaatttggtcaataaagaaagtggaagtcgatttctgtg 124
            |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 990  actttttaccaaatcggttcttaatttggtcaataaagaaggtggaagtcaatttctgtg 931

                                                                        
Query: 125  tgaaagataaagatgggacttccaggtcccaggaggaaaagtggagactcaggaaaagag 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  tgaaagataaagatgggacttccaggtcccaggaggaaaagtggagactcaggaaaagag 871

                                                                        
Query: 185  aatatcttcttttcaataaggctttgaaatgagaagcactaacaaccatgtaagatcttg 244
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 870  aatatcttcttttcaataaggctttgaaatgagaagcactaacagccatgtaagatcttg 811

                                                                        
Query: 245  ggatagcaatagaactagaaatctctgcaacctggagcctcaaccacatgcagcagctgg 304
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 810  ggatagcaatagaactagaaatctctgcgacctggagcctcaaccatatgcagcagctgg 751

                                                                        
Query: 305  ctgatatggaccagctgatataggttagctgataaggttaaggcaggagattcagtgctg 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  ctgatatggaccagctgatataggttagctgataaggttaaggcaggagattcagtgctg 691

                                                                        
Query: 365  tacaaaggtgtgatctggctagttttaaaatagtaaactgtttttcttctgcagagctaa 424
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  tacaaaggtgtgatttggctagttttaaaatagtaaactgtttttcttctgcagagctaa 631

                                                                        
Query: 425  gagggaaagaaaagatagaagccagggcaatagctggtcgcttggtagagctgagcttgg 484
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 630  gagggaaagaaaagatagaagccagggcaatagctggtggcttggtagagctgagcttgg 571

                                                                        
Query: 485  aagaatgggcaaatgaggagtgaggcaggctgccttcaatctgggagctaagctggggga 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570  aagaatgggcaaatgaggagtgaggcaggctgccttcaatctgggagctaagctggggga 511

                                                                        
Query: 545  acaggctgtggtcccaggcagaggacccggcttctttttaaatttacacccaaaaagaaa 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510  acaggctgtggtcccaggcagaggacccggcttctttttaaatttacacccaaaaagaaa 451

                                                                        
Query: 605  aggaaaagtcaggtgacagcacttgctggtgaggatatagaaagagaacactccacatcc 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450  aggaaaagtcaggtgacagcacttgctggtgaggatatagaaagagaacactccacatcc 391

                                            
Query: 665  tcaccagcatctgctgtcacctgaatttttga 696
            ||||||||||||||||||||||||||||||||
Sbjct: 390  tcaccagcatctgctgtcacctgaatttttga 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_b02.g1 MSMg01no536_b02.g1 CHROMAT_FILE:
MSMg01no536_b02.g1 PHD_FILE: MSMg01no536_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:04 2005
         (544 letters)



>mm_chr1_149292235_149293178
          Length = 944

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcatagcacatacggcccctctctttatttccatgtggagctgtttgttaactctgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcatagcacatacggcccctctctttatttccatgtggagctgtttgttaactctgct 260

                                                                       
Query: 61  taattaatttaaataatgaaggcataagtaaaatgtatttgcttagctataatttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattaatttaaataatgaaggcataagtaaaatgtatttgcttagctataatttatttt 320

                                                                       
Query: 121 taatgagaatacattaaataagcagcaaaatgttgtaatagagtggtatacattttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgagaatacattaaataagcagcaaaatgttgtaatagagtggtatacattttgctt 380

                                                                       
Query: 181 cccatattatgcccaatagtctaaattttaatagacaaatatctctagtgcaatatttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cccatattatgcccaatagtctaaattttaatagacaaatatctctactgcaatatttca 440

                                                                       
Query: 241 aatttatattgtgcaagatatatattatatatacatatatgtatacatacctagaaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttatattgtgcaagatatatattatatatacatatatgtatacatacctagaaacta 500

                                                                       
Query: 301 ccactaaggaatgtttaataaacaagaaaaaatacaggagtgcttttatctaaaaccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccactaaggaatgtttaataaacaagaaaaaatacaggagtgcttttatctaaaaccaag 560

                                                                       
Query: 361 cttatgtttttcatataagtatacccaaaatataacaaatatgagaatttgaagaaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttatgtttttcatataagtatacccaaaatataacaaatatgagaatttgaagaaatta 620

                                                                       
Query: 421 tcctacatcaagaatatatatattctcaattatactatcatcaagtatagatggctttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctacatcaagaatatatatattctcaattatactatcatcaagtatagatggctttga 680

                                                                       
Query: 481 atacaacctgcttggcaggtgttctctggaaaaagcaatcacagttttcaggcagaaatt 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atacaacctgcttggcaggggttctctggaaaaagcaatcacagttttcaggcagaaatt 740

               
Query: 541 gaag 544
           ||||
Sbjct: 741 gaag 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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