GGCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTCTGTCTTCCCTTAATAATTAACAAACTTCTGCCAGGATT
GAGGGCTATATAGATTGGTTATAACTGAATAGAATTTAATGACAGTAGTA
AAAATTATATAAAGACAGGATAGGAATGAAAGTCTTTAGTAATTTTGACC
GGTTGTATAGTACAGAAATGTATATTGTTGTATTAGCAAAGAGACATATA
GCTAGGAGCAGAATAAGAAAGCTGGCAGCAGTGGCATAAGATCGTGGTGA
CAGAAAATGAGTTTGTCCAGGCAGGTTCAGGCCTGTGACAGGAACTGAGC
ATGCAGGCTGTGAGAGAAGGCCGGGGTGTGGGAGCATTTGGGCCTGGCAG
ACCGCTGGCAGTATATGTGAAGATCCCTTAAAATATATGTTCAAATACAT
TGCAGCTCCCATTGGGTTATGGGGATGTTACTGAACTATTTGTACCGGCA
TCCCGAGAAGAGTTCAGTAGCGGGTCAGTGTACAGCCAAGCTAGAAATTC
AGGTCGTCACTTGAATAACTAGGGGCTACAGCAGCAATTTCCAGGAAATT
GCCAGAAAGCAGTCCAATCTAGTACCAGGGATTTTGGGCTGGCTGCAAGA
GCTCGAGGGATTTATGAACTGCTCTCTAGAAGGGAAGTTACCCCAGGGTA
TTAGTCTTAACTCATAGGTCAGCCAGAGACTGTTCATAANGACTGGGGCA
TTTGAACGCTAACCCCTCAGCCCAATGAAGGCGCATTGCTGGGTTCGT

NNCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATCCAGGTCGTGATGT
TACCCACGTGAGTTCACATAGCAGCCATGACTGTGCTCTTCACTTAATAT
ATTGTTGAATGCCTATTGCAGCACAAGAGTTTGATAGTCTTATATTTAGC
TTGGAGCTTTTTTTTTTCCCTGAAATTAAATGAGCATTTATTAGGATGGG
GCAGGGCATGTCTGCAGAGGGCAGTGGTCCACAGAACAAGGGTTTAAATT
GTCCCTATTATTCAATTAATAGTCATGTAAATATTCCATAATACTATGGT
ATATATACATATATATATATGTGTGTGTGTGTGTATATTATATATACACT
ATCAAGATGGCTCAGTGGGTAAAGGTTCTTGCCATCAAGCTTGATGACCT
GAGGTTACTCTCTAGTACCCATGTGATAGAAAGAGAAAATCTGCTTTTAT
GAACTGTCCTCTGACCACTATGCATACTGTAGCACATGTGTACCACCCAC
CCACCCCACCCCCTGCCAAACACACACACAGGCAAAATTAAAATATAATT
TAAAAAAGAAATCTGATTATGGTCAATANGATTACAGGCTTTATTAATAT
GCTTAAGCTTTTAAATATACTAATATTTACCTGTATATATTCACATTTAG
TTACATGATTTAAAAGTGAGTTTTTTTAGGTTTCTTTCCAAATTTTTAGT
TTATAGAATGGGACCTTGGTACAGAAACTGATGAATGTGCTTTACTTAAG

Query= MSMg01no536_e20.g1 MSMg01no536_e20.g1 CHROMAT_FILE:
MSMg01no536_e20.g1 PHD_FILE: MSMg01no536_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:22 2005
         (541 letters)



>mm_chr1_107620826_107621766
          Length = 941

 Score =  884 bits (457), Expect = 0.0
 Identities = 505/541 (93%), Gaps = 31/541 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatccaggtcgtgatgttacccacgtgagttcacatagcagccatgactgtgctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatccaggtcgtgatgttacccacgtgagttcacatagcagccatgactgtgctctt 260

                                                                       
Query: 61  cacttaatatattgttgaatgcctattgcagcacaagagtttgatagtcttatatttagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacttaatatattgttgaatgcctattgcagcacaagagtttgatagtcttatatttagc 320

                                                                       
Query: 121 ttggagcttttttttttccctgaaattaaatgagcatttattaggatggggcagggcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggagcttttttttttccctgaaattaaatgagcatttattaggatggggcagggcatg 380

                                                                       
Query: 181 tctgcagagggcagtggtccacagaacaagggtttaaattgtccctattattcaattaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcagagggcagtggtccacagaacaagggtttaaattgtccctattattcaattaat 440

                                                                       
Query: 241 agtcatgtaaatattccataatactatggtatatatacatatatatatatgtgtgtgtgt 300
           |||||||||||||||||||||||||||||||| ||||||||||||||             
Sbjct: 441 agtcatgtaaatattccataatactatggtatgtatacatatatata------------- 487

                                                                       
Query: 301 gtgtatattatatatacactatcaagatggctcagtgggtaaaggttcttgccatcaagc 360
                             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ------------------ctatcaagatggctcagtgggtaaaggttcttgccatcaagc 529

                                                                       
Query: 361 ttgatgacctgaggttactctctagtacccatgtgatagaaagagaaaatctgcttttat 420
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 530 ttgatggcctgaggttactctctagtacccatgtgatagaaagagaaaacctgcttttat 589

                                                                       
Query: 421 gaactgtcctctgaccactatgcatactgtagcacatgtgtaccacccacccaccccacc 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 590 gaactgtcctctgaccactatgcatattgtagcacatgtgtaccacccacccaccccacc 649

                                                                       
Query: 481 ccctgccaaacacacacacaggcaaaattaaaatataatttaaaaaagaaatctgattat 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccctgccaaacacacatacaggcaaaattaaaatataatttaaaaaagaaatctgattat 709

            
Query: 541 g 541
           |
Sbjct: 710 g 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)