Query= MSMg01no536_j12.b1 MSMg01no536_j12.b1 CHROMAT_FILE:
MSMg01no536_j12.b1 PHD_FILE: MSMg01no536_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:45 2005
(561 letters)
>mm_chr1_133248927_133249887
Length = 961
Score = 1056 bits (546), Expect = 0.0
Identities = 558/562 (99%), Gaps = 2/562 (0%)
Strand = Plus / Plus
Query: 1 ctctctgcagaggacagagtgttgaaaaagcataggcctctaacctagaaagctagttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctctgcagaggacagagtgttgaaaaagcataggcctctaacctagaaagctagttta 260
Query: 61 ttcctctggcctgaaaaaggggaaaataccagctttgttgctggttatgtgctaaacaga 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctctggcctgaaaaaggggaaaataccagctttgttgctggttatgtgctaaacaga 320
Query: 121 taatacacttcacacatatctggtactgtgtagacttgaagctaacaccaatcacaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatacacttcacacatatctggtactgtgtagacttgaagctaacaccaatcacaagca 380
Query: 181 tcctccaatctactgacctctacctttcagcttctcacatttcttttcctgaaatattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctccaatctactgacctctacctttcagcttctcacatttcttttcctgaaatattac 440
Query: 241 ccttcactttcacctgatggaattggactcactctttaagatccatattaaattctcaga 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttcactttcacctgctggaattggactcactctttaagatccatattaaattctcaga 500
Query: 301 ctctgggaagccaaccagccctgcattcctggtcccacttgaactcaactgcattcatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgggaagccaaccagccctgcattcctggtcccacttgaactcaactgcattcatcc 560
Query: 361 tcatatgaccccccaatacacgcagtcattccgaggcctgcaatttcatatcaccccacc 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatatgaccccc-aatacacgcagtcattccgaggcctgcaatttcatatcaccccacc 619
Query: 421 cagaatgcaggtatcttagagttttccagcatcttattcctgttt-caatttttcctagt 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 cagaatgcaggtatcttagagttttccagcatcttattcctgtttacaatttttcctagt 679
Query: 480 aggtcttattcatggaaaacattcaataaagttgactgatggataccacaggcaaagact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggtcttattcatggaaaacattcaataaagttgactgatggataccacaggcaaagact 739
Query: 540 caagcttttcaggaaatcatct 561
||||||||||||||||||||||
Sbjct: 740 caagcttttcaggaaatcatct 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_j12.g1 MSMg01no536_j12.g1 CHROMAT_FILE:
MSMg01no536_j12.g1 PHD_FILE: MSMg01no536_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:45 2005
(557 letters)
>mm_chr1_133404669_133405621
Length = 953
Score = 953 bits (493), Expect = 0.0
Identities = 517/527 (98%), Gaps = 4/527 (0%)
Strand = Plus / Minus
Query: 31 acaactaaattgtctaacttctttatagcatgaatttgttcaaaacatatatacatgcat 90
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 acaactaaattgtctaacctctttatagcatgaatttgttcaaaacatatatacatgcat 894
Query: 91 atttttcctattctgaagttataatatacttgtattttcttttaagagttttaaagagta 150
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 atttttcctattctgaaattataatatacttgtattttcttttaagagttttaaagagta 834
Query: 151 ttccttgtcatatatctttgttgaatacaccaggaattaatttttgtaaatgctgtgagc 210
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ttacttgtcatatatctttgttgaatacaccaggaattaatttttgtaaatgctgtgagc 774
Query: 211 tagggatctaactttattttatattcaatatgaatgtttgtcttaccttcataatccttt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tagggatctaactttattttatattcaatatgaatgtttgtcttaccttcataatccttt 714
Query: 271 ctctctactgatctgtaatagtcacctatgtgcttacttcagatttatacagatttgcgg 330
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 713 ctctccactgatctgtaatagtcacctatgtgcttacttcagatttatacagatttgtgg 654
Query: 331 acaagaccaattctccattatgctgaagtagtattgccccctgaatggatataaggtgtc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 acaagaccaattctccattatgctgaagtagtattgccccctgaatggatataaggtgtc 594
Query: 391 gctgtttgttaagggactcaaatgttttctctcctacagtagacaacactgggctgacac 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gctgtttgttaagggactcaaatgttttctctcctacagtagacaacactgggctgacac 534
Query: 451 cactgtcctacacagaatagctctgcaattatggtactgtatgtggcatctatttactat 510
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cactg----acacagaatagctctgcaattatggtactgtatgtggcatctatttactat 478
Query: 511 tttgtttaaaattttttcatttaatgagtatgggtattttgttttca 557
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 477 tttgtttaaatttttttcatttaatgagtatgggtattttgttttca 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 953
Length adjustment: 10
Effective length of query: 547
Effective length of database: 943
Effective search space: 515821
Effective search space used: 515821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
