TTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATAATCCTCAGATTTCTGTATAAGAAAATTATAGAAAT
GTAATTTGTAAGGACAAATTGTTTTTAAAGGTCCACATAACACTTAGTAA
TTAGATTAATTTTGCTTTAACTGTCTGGTAATTGTTAGAGGGTTTTTTTT
TCCCTTAGAGCATAGCTCTCAAATGTTAAAAAAAAAGAAGAAGCCACCTC
TTAATTCATGTCACATGCTGACATTTGAAAACTATAACACTCTTTCCTCA
CTATAAGACCCTTTCCTCCCCCACAACCTGCCTCTATCTCTTCTGAGTCA
CTTTAGACCAAACCCTGGTTCTTGAAAGAACTTTTGAAATTCTTAAAATA
GCATAAAGAACTCTAAATGTTTGAAGAGAAAAACCCTACCCCTGAGTCAA
AAAGATTAACTCATTAGCTCACGGCATTTTGTCTAACACAGAGGCTAAAC
TTCCTAGGTGGGAATTGGTTGTTTAGCCTTCCATCCAACGTTCCTTTTCC
CTGTGGAGTGTTGTTGTGTAGATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATTCCCTTTTNGNNTCTCNTGGA
TTTGTTGTTTCTCTTGCCTTTCCCCCTGTTCTTTCGTAACCGCGTAGTCG
CCCCCCCTTCTTCCCGCCTTTCCCTCCCTTTCCCGTTTTCCCGTTTCCCC
TTGCCTTCG

CCCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGATTTTTCAAATGATATTTA
AATGCTAGTGTCCTAAGAGGTGGTGTGTGTTATTGGTGGGTTGTTGGCTG
CTGCTGGCACTAGCCTGTCAACCACCGCACCCCCACCCTCCACGTCCACC
TACTCCACCCCCTGCTGTCCCCATCCCTTCCTTCCCCCCCCCTGCCTCCC
GCCCCTTTTCACCCCCCCCCCTCCCACCCCCCTTCCCCCTCCCCTCCCCC
CCCCCCTCTCCCTCCCCCCCTCCCCCCTCCCCTCCCCCCCCCCCCCCCCC
CCCTCTCCCCCCCCCTTCCCTTCCCCCTTTCCCCCCCCCCTCCCCTCCCC
CCCCTCCCCATCCCACTACCCCCCCTCCCCCCCCTTAATCCTCCCCCCCC
CTCCCCCCCCCCCCCCCTCTACCCCCCTCCCGCTCCCATTACCCCCCCCC
ACCCCCACCCCCCCCCATCCCCCCCGCACCCACGCCCTCCCTCCCTCTCC
CCCCCCCCCTAACCCCCCCCCTCCCTTCCCCCTCACTCCCCTCTCCCCCC
CCCCCTCTCCCCCCCCCCCCACCCCCCCCTTCCTCCTCCCCCCCCCCCCA
CTGTCCCCCCCTCCCCCCCCCCCCACCTTTCCCCCAGCTCCCCTCCCTTC
TCCCCCTTCCCCCCCCCTCCCACCCCCCCCCCCCCCCCCTTTCGTCCTCT
ACCCCCCCTCCCCCTCTATTCCCCCCATTCCTCTTATACCCGCGCACCCC
ACCACCCCCTTCCCCCCACCCCCCCCACCCCCCN

Query= MSMg01no536_k01.b1 MSMg01no536_k01.b1 CHROMAT_FILE:
MSMg01no536_k01.b1 PHD_FILE: MSMg01no536_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:47 2005
         (576 letters)



>mm_chr1_80211782_80212757
          Length = 976

 Score = 1077 bits (557), Expect = 0.0
 Identities = 566/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataatcctcagatttctgtataagaaaattatagaaatgtaatttgtaaggac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataatcctaagatttctgtataagaaaattatagaaatgtaatttgtaaggac 264

                                                                       
Query: 65  aaattgtttttaaaggtccacataacacttagtaattagattaattttgctttaactgtc 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattgtttttaaatgtccacataacacttagtaattagattaattttgctttaactgtc 324

                                                                       
Query: 125 tggtaattgttagagggtttttttttcccttagagcatagctctcaaatgttaaaaaaaa 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtaattgttagagggttttttttccccttagagcatagctctcaaatgttaaaaaaaa 384

                                                                       
Query: 185 agaagaagccacctcttaattcatgtcacatgctgacatttgaaaactataacactcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaagaagccacctcttaattcatgtcacatgctgacatttgaaaactataacactcttt 444

                                                                       
Query: 245 cctcactataagaccctttcctcccccacaacctgcctctatctcttctgagtcacttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcactataagaccctttcctcccccacaacctgcctctatctcttctgagtcacttta 504

                                                                       
Query: 305 gaccaaaccctggttcttgaaagaacttttgaaattcttaaaatagcataaagaactcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaccaaaccctggttcttgaaagaacttttgaaattcttaaaatagcataaagaactcta 564

                                                                       
Query: 365 aatgtttgaagagaaaaaccctacccctgagtcaaaaagattaactcattagctcacggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgtttgaagagaaaaaccctacccctgagtcaaaaagattaactcattagctcacggc 624

                                                                       
Query: 425 attttgtctaacacagaggctaaacttcctaggtgggaattggttgtttagccttccatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttgtctaacacagaggctaaacttcctaggtgggaattggttgtttagccttccatc 684

                                                                       
Query: 485 caacgttccttttccctgtggagtgttgttgtgtagatagatagatagatagatagatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caacgttccttttccctgtggagtgttgttgtgtagatagatagatagatagatagatag 744

                                        
Query: 545 atagatagatagatagatagatagataga 573
           |||||||||||||||||||||||||||||
Sbjct: 745 atagatagatagatagatagatagataga 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)