Query= MSMg01no536_k18.b1 MSMg01no536_k18.b1 CHROMAT_FILE:
MSMg01no536_k18.b1 PHD_FILE: MSMg01no536_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:51 2005
(542 letters)
>mm_chr1_105264901_105265842
Length = 942
Score = 971 bits (502), Expect = 0.0
Identities = 526/538 (97%), Gaps = 7/538 (1%)
Strand = Plus / Plus
Query: 5 gaattccatagaggatcctgccctgtgtgagactataagctctttatagacagaatttct 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatagaggagcctgccctgtgtgagactataagctctttatagacagaatttct 264
Query: 65 gtatgttttctcaaaacccaggcaataggttttcctacagatggaccagcaactcttcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatgttttctcaaaacccaggcaataggttttcctacagatggaccagcaactcttcag 324
Query: 125 ttataacttctccctggaagctaagttcccgacagtgaggtcactcattcttggcaaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttataacttctccctggaagctaagttcccgacagtgaggtcactcattcttggcaaagt 384
Query: 185 cacaggtctgttttttctctttgagatatttcatagatgttgttaaacttgatgaatctg 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 cacaggtcttttttttctctttgagatatttcatagatgttgttaaacttgatgaatttg 444
Query: 245 ttccctatgttggtgtgttcagtgattcacatcagaagtcactgctcccatctgtagttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccctatgttggtgtgttcagtgattcacatcagaagtcactgctcccatctgtagttt 504
Query: 305 tgatacaggttttgaaatgggatgtactgagatgaacatgtggcaatggtacagaatgtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgatacaggttttgaaatgggatgtactgagatgaacatgtggcaatggtacagaatgtc 564
Query: 365 attcatgtcggctttattaattggttagttgttagttgtttatagtaactattttgttgg 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 attcatgtcggctttattaattggttagttgttagttgcttatagtaactattttgttgg 624
Query: 425 ttatttgttaataacctagaggaaaggagaatcaagtaataaagtaaaatattttcattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatttgttaataacctagaggaaaggagaatcaagtaataaagtaaaatattttcattt 684
Query: 485 aaaatttaaaattattaactttttaacacagtcaatattttacttgcatttacttggt 542
|||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 aaaatt-------attaactttttaacacagtcaatattttacttgcatttccttggt 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_k18.g1 MSMg01no536_k18.g1 CHROMAT_FILE:
MSMg01no536_k18.g1 PHD_FILE: MSMg01no536_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:51 2005
(552 letters)
>mm_chr1_105388040_105388991
Length = 952
Score = 992 bits (513), Expect = 0.0
Identities = 540/549 (98%)
Strand = Plus / Minus
Query: 1 tcatgtgcagtttatgtattatttcttagatggaagacaatcagttcagggactttttgc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 622 tcatgtgcagtttatgtattatttcttagatggaagacaatcagtttagggactttttgc 563
Query: 61 cccgcagtctcatcttttcctgaatggtgttttgttccccttctgacagcttgtcactac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccgcagtctcatcttttcctgaatggtgttttgttccccttctgacagcttgtcactac 503
Query: 121 tttactcaaactgaatcaagatccctggatttcactgagcccctgcctcaaaaatactgt 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 502 tttactcaaactgaatcaagatccctggatttcactgataccctgcctcaaaaatacttt 443
Query: 181 attaaattgatgattcttgacatccttcaccagtctacatatgcccaatcatcctcgcac 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 442 attaaattgatgattcttgacatcgttcaccagtctacatatgcccaatcatccccgcac 383
Query: 241 atgtacatatgaaagaacatgcacaaacacaagtgtgcatgtgtgcatgcacacacagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgtacatatgaaagaacatgcacaaacacaagtgtgcatgtgtgcatgcacacacagtg 323
Query: 301 agaacacacacacagtgtagggagaaaagaatcagaaagaataattattaaaaatgtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaacacacacacagtgtagggagaaaagaatcagaaagaataattattaaaaatgtctc 263
Query: 361 tacaaaacttttactgagatttgcttatctgtgcatgaatgtctaaatatggagattgag 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 262 tacaaaacttttactgagatttgcttatttgtgcatgaatgtctaaatatggagattgag 203
Query: 421 aatggtgacatgcacctataatcacagtactagagagacagaggcaagtggacctcttac 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 202 aatggtgacatgcacctataatcacagtactagagagacagaagcaagtggacctcttac 143
Query: 481 atggtttgtataaagaattctaaaatatctgggactgcatagtgagatcctgttaattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 atggtttgtataaagaattctaaaatatctgggactgcatagtgagatcctgttaattat 83
Query: 541 gtacttata 549
||| |||||
Sbjct: 82 gtatttata 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
