Query= MSMg01no537_d22.b1 MSMg01no537_d22.b1 CHROMAT_FILE:
MSMg01no537_d22.b1 PHD_FILE: MSMg01no537_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:34 2005
(599 letters)
>mm_chr1_169019866_169020864
Length = 999
Score = 1098 bits (568), Expect = 0.0
Identities = 589/596 (98%), Gaps = 2/596 (0%)
Strand = Plus / Plus
Query: 5 gaattccatagtagtg-ttccacacagaatggtgtaatgtctgagaactgccgggcatgt 63
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatagtagtgctt-catacagaatggtgtaatgtctgagaactgccgggcatgt 263
Query: 64 tagagactgtatatgttgtattcacaagagagtgcccaagatagaaagaattcattttcc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagagactgtatatgttgtattcacaagagagtgcccaagatagaaagaattcattttca 323
Query: 124 tattccacctccagcatctaccaggttcccagagcaagtagatttctcctgcattcatag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tattccacctccagcatctaccaggttcccagagcaagtagatttctcctgcattcatag 383
Query: 184 caccatgccttcttgccccattaatcagactgtcctgcaccaagtcccatctctcagggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caccatgccttcttgccccattaatcagactgtcctgcaccaagtcccatctctcagggt 443
Query: 244 cctgctctctgataggaaacagttcagtcagtgggtgctaaagagttgagcgttacactt 303
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 cctgctctctgataggcaacagttcagtcagtgggtgctaaagagttgagtgttacactt 503
Query: 304 cttgggtgacctttaccttttaattggggctatagacaatgccttaatctgaaggagtag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttgggtgacctttaccttttaattggggctatagacaatgccttaatctgaaggagtag 563
Query: 364 cttgaatgctgggaatttcaggtgcagaagtgggccagtaagagagattagtttttttct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttgaatgctgggaatttcaggtgcagaagtgggccagtaagagagattagtttttttct 623
Query: 424 taggagggcattttagagcctcctctttcccatacccatctttaaagtcagctcatacat 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 taggagggcattttagagcctcctcttccccatacccatctttaaagtcagctcatacat 683
Query: 484 acatgagcacaaacaagcacacttacctacatctacatcccataattttggaatacctcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acatgagcacaaacaagcacacttacctacatctacatcccataattttggaatacctcc 743
Query: 544 cttgcattggccctatctttaaacataaaaataaattagaaatgaaccagctaaat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttgcattggccctatctttaaacataaaaataaattagaaatgaaccagctaaat 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_d22.g1 MSMg01no537_d22.g1 CHROMAT_FILE:
MSMg01no537_d22.g1 PHD_FILE: MSMg01no537_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:34 2005
(571 letters)
>mm_chr1_169186846_169187816
Length = 971
Score = 543 bits (281), Expect = e-158
Identities = 305/313 (97%), Gaps = 2/313 (0%)
Strand = Plus / Minus
Query: 260 ggtgctggagctgtgcctgtagcttacatcttgagtcaaccaggagggaatcggggagca 319
||||| |||||||| |||| |||||||||||||||||||||||||||| || ||||||||
Sbjct: 967 ggtgccggagctgtacctggagcttacatcttgagtcaaccaggaggggat-ggggagca 909
Query: 320 cccgagtgagcactaactgggaatgacgcccctaagtgacacctcctccaataaggccac 379
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 cccgagtgtgcactaactgggaatgacgcccctaagtgacacctcctccaataaggccac 849
Query: 380 acctcctaatccttcccaaacggtgtccactgcagactaagcattcacatatatgagtct 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 acctcctaatccttcccaaacggtgtccactgcagactaagcattcacatatatgagtct 789
Query: 440 at-ggggaccattctcaccacacatagtttatataccatgggctacttttatatttgaga 498
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 atgggggaccattctcaccacacatagtttatataccatgggctacttttatatttgaga 729
Query: 499 tcttccttcctcagccttctcagtaacggactgtagctgagtagctcacgccattggctc 558
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 728 tcttccttcctcagccttctcagtaacggactgtagctgagtagcccacgccattggctc 669
Query: 559 ttagtctgctacg 571
|||||||||||||
Sbjct: 668 ttagtctgctacg 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
