BAC Information

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BAC

Clone NameMSMg01-537G18
Chromosome1 (Build37)
Map Location 118,642,479 - 118,642,595
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537G18.T7 (MSMg01no537_g18.b1)MSMg01-537G18.TJ (MSMg01no537_g18.g1)
ACCAG604398AG604399
length754759
length of high quality
(start - end)		695 (49 - 743)628 (80 - 707)
definitionCHROMAT_FILE: MSMg01no537_g18.b1 PHD_FILE: MSMg01no537_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:47 2005CHROMAT_FILE: MSMg01no537_g18.g1 PHD_FILE: MSMg01no537_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTAATAACTTGCCACATTTACTCCTATATGGATTCTTGG
GTTAAGTTGAAACGTTGAGGACAGTGTAAAAGATTTTCACACTTATTAGA
TTTATAAAATCTCTCTCCCCAACCCATCCACTCCTGCTTCCTGGCCCTAG
CATTCCCCTGTACTGGGGCATATAATGATGCCTGACTAGGCCATCTTCGG
CTACATATGCATCTAGAGACATGACCTCAGGGGATACTGGTTAGTTCATA
TTGTTCTTCCTCCTATAGGGTTGCAGACCCCTTCAGCTTCTTCTTTCTCT
AGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGACGGCTGTGAGCA
TCCACTTCTGTATTTGCCAGGCACTGACATAGCCTCACAAGGGACAGCTA
TATAATAGCTGAGTAGTATTCCACTGTGTAAAGGAACCACATATTTCTGT
ATCCATTCTTCTGTCATGGGACATCTGTGATGTTTCCAGCTTCTGGCTTT
CACAAGCAAGGCCACTATGCACATAATGGAACAAGTGACCCTGTGGCATG
CTGGGGCATAATTTGGGTATATTCCCAAAAGTGGGTGGTATTGCCATGCC
AGGTCTTCAGGTACATCTATTTTCAATTTTCTAAGTTTCCAGATTGATTT
CTAAAGTGGTTGTACCAGTTTGCAATCCCACCAGCAATGGAAGAAGGTTT
CTGT

NCCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACAGGGAGTGGTACCAAC
CACAGTGGGAAGCTCATCTTACCTCAGTTAATAAATCATAGCTGTCTTGT
GTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCA
TCTATAGGATGGAACACAGTGCCCCCAATGGAGGAGCTAAAGAAAGTACC
CAAGGAGCTGAAGGGGTCTACAACCCTATAGGTGGAACAACGATATGAAC
TAACCAGTACCCCCAGAGCTCATATCTCTAGTTGCATATGTAGCAGAAGA
TGGGCTAGTCAGCCATCATTGGGAAGAGAAGCCCCTAGGACTTGCAGACT
TTATATGCTCCAGTAATGGGGAATGCCAGGGTCAAGAAGTGGGAGTGGGT
GGGTAGGGGAGCAGGGCTGGGGGGGGTATAGGAAAATTTTGAGATAGCAT
TTGAAATGTAAATAAAGAAAATATCTAATAAAATTAAATAAAATAAAAAT
AATTTTAAAAAGATAATGCCACAAACTTTCCCAGAGCCAGGGGATTCTAG
TTTCTGTTCAAATTGACTATTAACACTAACCATAACACAAACAATCCTGA
AAAATTATAGACAATAGAAAGGTATGAGTACTAGAATAGAAATTGCATTA
ATTCAATGCAATAGAATTAATTTATTAATTAATAAAACGTTTTATGTATG
AAATTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_g18.b1 MSMg01no537_g18.b1 CHROMAT_FILE:
MSMg01no537_g18.b1 PHD_FILE: MSMg01no537_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:47 2005
         (695 letters)



>mm_chr1_118642281_118643376
          Length = 1096

 Score =  188 bits (97), Expect = 2e-51
 Identities = 112/117 (95%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtaata-acttgccacatttactcctatatggattcttgggttaagttgaa 63
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaattctttgtaaaagatttgccacatttactcctatatggattcttgggttaagttgaa 256

                                                                    
Query: 64  acgttgaggacagtgtaaaagattttcacacttattagatttataaaatctctctcc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 255 actttgaggacagtgtaaaagattttcacacttattagatttataaaatctgtctcc 199


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1096
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1086
Effective search space:   743910
Effective search space used:   743910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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