NGGGGNAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATGAGTTTGTATGCTAATCCAACAGACCTTGGATAAT
ACCTGACTCTTATGCTCCATAAAGCAAAAAAAGAAAAAAAAGAANATATC
TTTTCTTTAAATCTTAGAGGAAAGTAGGTCACATTTAGATGTAGAATTTC
CATTTCCAATTAGCCATTAAATTCGTTGAATACTTGGGGTTCTATTAGCC
TGACTGAAATAATGCTTATTTTTAAAACAAATTATTGCTAAATTAATTTT
CTAGTCATGTTCTAAATAGCATAAAGACAAAAGACTATGTGTACTCAAGA
AGAGTAGTTTTATGAATTAAAGGATATCAATGAATATTGAGTTGTTGAAA
AGATAAAATATCACTTTGATTTCAAGCCATATTGGTAATTTTAATATAAT
TATATCATACTTCATGTCCAAACCTTGGGGACCCATGTCACTGACTTCCT
ATTCTGACAGAGATTGGTTGCTGAATGACTTGTCAACTTCAGAAATTATA
CAAAAGCATTGACTCATTTTCATTTTATAAAACATTTCTGCTTGTATAAA
ACATAAAACATCTAGAGTTAATCACCTTCAGTTTTTCATTTCCTCTTGAG
TATCTACAGATCATCTCAATGTAAGAGGCCATCAATGGCCTATTCATTAT
CACCTCTCAATCTTATCTTGTCACAACAAAGCTCATACACACTCATCAAC
T

NNNNNNNCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGACTGGAGTAGA
GACATACCCTTTGTACTCACCTTTAATCTATAACAATGAAGGTAAAATTA
GTTTGTAGAAGGAATCAGCCATATTTGAAGTTGAAATCTAATTGAGGGCC
AGACAAAGTGATGAATCACAGAAAGTTTTGACAGAATGAGTCAGAGATAG
AATACTCCCTACTCTTTCAAAAACAGCAAAGGAAAGATAATCTATTTAGG
AGCAGTGCAAGGAGAAAGAGTCAATCTCTTGAGAGTCAACTCAATGAATG
AAATGTAGTGGAGCTGGGTTTACTTGAGAGTTCATGCAGTTTATTTCAGG
TCGAGAGAGGCAATGGAAGCTAGAGAATAAGAAGGAAATAAAATATTAGA
ACAAATTGACAAAGTTAGTTTTCAGCCAGGCAGAGCAATTCAATCAGAAA
CTGAGAGAGGCCAGATTGAATCAGTCAGCTTGGAGGGACATTTGAACCAG
AACAGCTCAGTTAAAGCAGTCAGCCAGATTTCAGAAAGAGCTGGAAAGGG
TGAGATTATTCAACAGTAAGCCTCTGATATGACAATTACATCTGGTGAAT
AAAACATAGTTTTACAGGATTTAAACCTGTTTGAAAATATGTCATAAGTA
AAAGTTTTGATATTATGTCTAAAAAAGGTACCGTTTNGAAAATTCATAAT
AAT

Query= MSMg01no537_g24.b1 MSMg01no537_g24.b1 CHROMAT_FILE:
MSMg01no537_g24.b1 PHD_FILE: MSMg01no537_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:48 2005
         (622 letters)



>mm_chr1_150585398_150586419
          Length = 1022

 Score =  922 bits (477), Expect = 0.0
 Identities = 601/681 (88%), Gaps = 64/681 (9%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgagtttgtatgctaatccaacagaccttggataatacctgactcttatgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaattccatgagtttgtatgctaatccaacagaccttggataatacctgactcttatgct 663

                                                                       
Query: 65  ccataaagcaaaaaaagaaaaaa-aagaanatatcttttctttaaatcttagaggaaagt 123
           ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 662 ccataaagcaaaaaaagaaaaaagaagaa-atatattttctttaaatcttagaggaaagt 604

                                                                       
Query: 124 aggtcacatttagatgtagaatttccatttccaattagccattaaattcgttgaatactt 183
           ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 603 aggtcacatttagatgtagaatttccacttccaattagccattaaattcattgaatactt 544

                                                                       
Query: 184 ggggttctattagcctgactgaaataatgcttatttttaaaacaaattattgctaaatta 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 543 ggggttttattagcctgactgaaataatgcttatttttaaaacaaattatttctgaatta 484

                                                                       
Query: 244 attttctagtcatgttctaaatagcataaagacaaaagactatgtgtactcaagaagagt 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 483 attttctagtcatgttctaaatagcataaatacaaaagactatgtgtactcaagaagagt 424

                                                                       
Query: 304 agttttatgaattaaaggatatcaatgaatattgagttgttgaaaagataaaatatcact 363
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 423 agttttatgaattaaaggatatcagtgattattgagttgttgaaaagataaaatatcact 364

                                                                       
Query: 364 ttgatttcaagccatattggtaattttaatataattatatcatacttcatgtccaaacct 423
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 363 ttgatttcaagccatattggtaattttaatataattatatcgtacttcatgtccaaacct 304

                                                                       
Query: 424 tggggacccatgtcactgacttcctattctgacagagattggttgctgaatgacttgtca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tggggacccatgtcactgacttcctattctgacagagattggttgctgaatgacttgtca 244

                                                                       
Query: 484 acttcagaaattatacaaaagcattgactcattttcattttat--aaa--------ac-- 531
           |||||| ||||||||||||||||  || ||||||||||| |||  |||        ||  
Sbjct: 243 acttcataaattatacaaaagcagggattcattttcattgtattgaaaggaaagatacct 184

                                                                       
Query: 532 ---------------att-----------------------------------tctgctt 541
                          |||                                   |||||||
Sbjct: 183 tctcagtaagcagtgattaccacttcttcaaaaagattggctgtgttcacttctctgctt 124

                                                                       
Query: 542 gtataaaacataaaacatctagagttaatcaccttcagtttttcatttcctcttgagtat 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gtataaaacataaaacatctagagttaatcaccttcagtttttcatttcctcttgagtat 64

                                
Query: 602 ctacagatcatctcaatgtaa 622
           ||||||||||| |||||||||
Sbjct: 63  ctacagatcatttcaatgtaa 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)